FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RHOP5 (Chaperone protein htpG OS=Rhodopseudomonas palustris (strain BisA53) GN=htpG PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.258e-28
Identity = 65/128 (50.78%), Postives = 95/128 (74.22%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD-LNLIGQFGVGFYSVYLGAD 694
            FQAEV+ L++++++S+YS  +IFLRELISN SDALDK+R+ +++  +++  G   K++I  K  K    LS+ D GIGM +++LI NLGTIAKSGT +F+ K+  + D  NLIGQFGVGFY+ ++ AD
Sbjct:   13 FQAEVAELLNLMVHSVYSETEIFLRELISNGSDALDKLRYEAISKPDLMEAGGTPKIQIVPK--KAPDTLSVIDNGIGMDRQELIDNLGTIAKSGTKSFLTKLTEAKDGSNLIGQFGVGFYAAFMVAD 138          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PHOPR (Chaperone protein htpG OS=Photobacterium profundum GN=htpG PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.258e-28
Identity = 67/142 (47.18%), Postives = 99/142 (69.72%), Query Frame = 2
Query:  272 ISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT--SGDLNLIGQFGVGFYSVYLGA 691
            +S++    N E   FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L+  ++    ++  + +++  + E   L++ D GIGM ++D+I++LGTIAKSGT  F  K+    S D  LIGQFGVGFYS ++ A
Sbjct:    1 MSEQGTHINKETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSQPDLF--ENDADIGVKLSFNAEAGTLTVSDNGIGMNRDDVIEHLGTIAKSGTKDFFSKLSNDESKDSQLIGQFGVGFYSSFIVA 140          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_COLP3 (Chaperone protein htpG OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=htpG PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.258e-28
Identity = 65/136 (47.79%), Postives = 96/136 (70.59%), Query Frame = 2
Query:  293 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            N  +   F ++ ++++ ++I+SLYSNK+IFLREL+SNA+DA DK+RF +L+D   L E D   L +++  DKE   L+I D GIGM  +++I++LGTIAKSGT+ F  ++    + D  LIGQFGVGFYS ++ AD
Sbjct:    5 NQVQNHAFASDNAKILQLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSD-NTLYENDG-DLRVRVSCDKENNTLTISDNGIGMNVDEVIEHLGTIAKSGTAEFFSQLSGDQASDSQLIGQFGVGFYSAFIVAD 138          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PSYIN (Chaperone protein htpG OS=Psychromonas ingrahamii (strain 37) GN=htpG PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.950e-28
Identity = 65/130 (50.00%), Postives = 96/130 (73.85%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVL-GEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLGAD 694
            F A+  +L+ ++I+SLYSNK+IFLREL+SNA+DA DK+RF +L+D  +   +GD   L +++  D + K ++I D GIGM+++++I++LGTIAKSGTS F E++      D  LIGQFGVGFYS ++ AD
Sbjct:    9 FSADTGKLLKLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSDGSLFENDGD---LRVRLSFDADLKTITISDNGIGMSRDEVIEHLGTIAKSGTSDFFEQLSGDQVKDSQLIGQFGVGFYSSFIVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BORAP (Chaperone protein htpG OS=Borrelia afzelii (strain PKo) GN=htpG PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.950e-28
Identity = 68/136 (50.00%), Postives = 96/136 (70.59%), Query Frame = 2
Query:  305 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE--KMQTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            K +F  EV+ L+ +II+SLYS+K+IFLRELISNASDA+DK++FLSLT+++      N  LE +I++  + K + I+D GIGM +++L  +LG IAKSGT  F+   K       NLIGQFGVGFYS ++ ++  EV
Sbjct:    2 KKQFDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKF----KNIALEPKIEITFDDKSILIKDNGIGMNEQELTNHLGVIAKSGTKEFINNLKQDEKKSANLIGQFGVGFYSAFIVSEKVEV 133          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_WOLTR (Chaperone protein htpG OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=htpG PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.852e-28
Identity = 66/134 (49.25%), Postives = 97/134 (72.39%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD----LNLIGQFGVGFYSVYLGA 691
            E  +F AEV ++++I+I+SLY+NKDIFLREL+SNASDA DK+R+ S  +  +L    + +L+I I  +K++  L + D GIGM+++DLI NLGTIA SGT  F++ ++ S D    + LIG+FGVGFYS ++ A
Sbjct:   13 ENLKFDAEVGKVLNIVIHSLYTNKDIFLRELVSNASDACDKLRYESQLNPNLL--DSSGELKITISSNKDENELYVTDNGIGMSRQDLIGNLGTIASSGTQKFLDAIKNSKDSSQAVELIGKFGVGFYSSFMVA 144          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BORGA (Chaperone protein htpG OS=Borrelia garinii GN=htpG PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.852e-28
Identity = 68/136 (50.00%), Postives = 96/136 (70.59%), Query Frame = 2
Query:  305 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE--KMQTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            K +F  EV+ L+ +II+SLYS+K+IFLRELISNASDA+DK++FLSLT+++      N  LE +I++  + K + I+D GIGM ++DL  +LG IAKSGT  F+   K       +LIGQFGVGFYS ++ ++  EV
Sbjct:    2 KKQFDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKF----KNIALEPKIEITFDDKSILIKDNGIGMNEQDLTNHLGVIAKSGTKEFINNLKQDEKKSASLIGQFGVGFYSAFIVSEKVEV 133          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BORBU (Chaperone protein htpG OS=Borrelia burgdorferi GN=htpG PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.852e-28
Identity = 68/136 (50.00%), Postives = 96/136 (70.59%), Query Frame = 2
Query:  305 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE--KMQTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            K +F  EV+ L+ +II+SLYS+K+IFLRELISNASDA+DK++FLSLT+++      N  LE +I++  + K + I+D GIGM ++DL  +LG IAKSGT  F+   K       +LIGQFGVGFYS ++ ++  EV
Sbjct:    2 KKQFDTEVNDLLYLIIHSLYSHKEIFLRELISNASDAIDKLKFLSLTNEKF----KNIALEPKIEISFDDKSILIKDNGIGMDEQDLTNHLGVIAKSGTKEFINNLKQDEKKSASLIGQFGVGFYSAFIVSEKVEV 133          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_AZOC5 (Chaperone protein htpG OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=htpG PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.852e-28
Identity = 61/139 (43.88%), Postives = 103/139 (74.10%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSG---DLNLIGQFGVGFYSVYLGADYXEVI 709
            E   F+A+V++L+ ++++S+YS+KD+FLRELISNA+DA +K+R+ ++T   +LGE  + +  I + +D E   L++ D GIGM+++++++ LGTIA+SGT AF+E+++ +       LIGQFGVGFYS ++ A+  +VI
Sbjct:   10 ESRTFEADVAKLLHLMVHSVYSDKDVFLRELISNAADACEKLRYEAITTPALLGE--DARPRITLAIDAEGGRLTVEDNGIGMSRDEMVEALGTIARSGTKAFMERIEAAAGGEKAELIGQFGVGFYSAFMVAEKVDVI 146          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_VEREI (Chaperone protein htpG OS=Verminephrobacter eiseniae (strain EF01-2) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.031e-28
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            +   FQAEV++L+ ++ +SLYSN++IFLRELISNASDA DK+RF  L    +    D  +LE+++  D+  + L+I D GIGM++++ I++LGTIAKSGT  F+ ++      D  LIGQFGVGFYS ++ AD
Sbjct:    4 QTLSFQAEVAQLLHLVTHSLYSNQEIFLRELISNASDACDKLRFAGLNQPALF--EDAPQLEVRVSFDQTARTLTITDNGIGMSQQEAIEHLGTIAKSGTKDFMGQLSGDQKQDAQLIGQFGVGFYSGFIVAD 134          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_RHOP52.258e-2850.78Chaperone protein htpG OS=Rhodopseudomonas palustr... [more]
HTPG_PHOPR2.258e-2847.18Chaperone protein htpG OS=Photobacterium profundum... [more]
HTPG_COLP32.258e-2847.79Chaperone protein htpG OS=Colwellia psychrerythrae... [more]
HTPG_PSYIN2.950e-2850.00Chaperone protein htpG OS=Psychromonas ingrahamii ... [more]
HTPG_BORAP2.950e-2850.00Chaperone protein htpG OS=Borrelia afzelii (strain... [more]
HTPG_WOLTR3.852e-2849.25Chaperone protein htpG OS=Wolbachia sp. subsp. Bru... [more]
HTPG_BORGA3.852e-2850.00Chaperone protein htpG OS=Borrelia garinii GN=htpG... [more]
HTPG_BORBU3.852e-2850.00Chaperone protein htpG OS=Borrelia burgdorferi GN=... [more]
HTPG_AZOC53.852e-2843.88Chaperone protein htpG OS=Azorhizobium caulinodans... [more]
HTPG_VEREI5.031e-2848.87Chaperone protein htpG OS=Verminephrobacter eiseni... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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