FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RHOPS (Chaperone protein htpG OS=Rhodopseudomonas palustris (strain BisB5) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.031e-28
Identity = 68/133 (51.13%), Postives = 94/133 (70.68%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD-LNLIGQFGVGFYSVYLGAD 694
            +E   FQAEV+ L++++++S+YS  DIFLRELISNASDALDK+R+ S+    ++  G   K  IQI   K    L++ D GIGM +++LI NLGTIAKSGT +F+ K+  + D   LIGQFGVGFY+ ++ AD
Sbjct:    8 SETKPFQAEVAELLNLMVHSVYSETDIFLRELISNASDALDKLRYESIATPALMEAGGAPK--IQIVPRKAPDTLTVIDNGIGMNRQELIDNLGTIAKSGTKSFLTKLTEAKDGAGLIGQFGVGFYAAFMVAD 138          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_METNO (Chaperone protein htpG OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.031e-28
Identity = 67/138 (48.55%), Postives = 98/138 (71.01%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM---QTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            E+  F AEV RL+D+++++LYS ++IFLREL++NA+DA+D+ RF +LTD  +    +    +++I+ DK  + L+I D GIGM KEDL +NLGTIA+SGT AF + +   +     +LIGQFGVGFYS ++ AD  EV
Sbjct:    6 ERHAFGAEVGRLLDLVVHALYSEREIFLRELVANAADAVDRRRFGALTDPALALPAE---AKVRIRPDKAARTLTISDPGIGMGKEDLAQNLGTIARSGTRAFSQSLAEAKPDERPSLIGQFGVGFYSAFMVADRVEV 140          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_METPB (Chaperone protein htpG OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.582e-28
Identity = 69/143 (48.25%), Postives = 98/143 (68.53%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE-----KMQTSGDL--NLIGQFGVGFYSVYLGAD 694
            +    E+ EF AEV RL+D+++++LYS+++IFLREL++NA+DA D+ RF +LT++ +    D     + I  DK  + L+I D GIGM+KEDL +NLGTIA+SGT AF +     K     DL  +LIGQFGVGFYS ++ AD
Sbjct:    1 MSETVERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADATDRRRFEALTNEALALPSD---ARVLIAPDKAARTLTISDSGIGMSKEDLAQNLGTIARSGTRAFSQALGEAKGSEGEDLRPSLIGQFGVGFYSAFMVAD 140          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PSEA6 (Chaperone protein htpG OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=htpG PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.121e-27
Identity = 67/133 (50.38%), Postives = 96/133 (72.18%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            E   FQ EV +L+ ++I+SLYSNK+IFLREL+SNA+DA DK+RF +L++ + L EGD   L +++ +DK+   ++I D GIGM +  +I++LGTIAKSGTS F   +    + D  LIGQFGVGFYS ++ A+
Sbjct:    8 ETHGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRFKALSN-DSLYEGDG-DLCVKLSIDKDAGSITISDNGIGMDRASVIEHLGTIAKSGTSEFFSNLSGDQAKDSQLIGQFGVGFYSAFIVAE 138          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_GEOSL (Chaperone protein htpG OS=Geobacter sulfurreducens GN=htpG PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.121e-27
Identity = 68/131 (51.91%), Postives = 97/131 (74.05%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF---VEKMQTSGDLNLIGQFGVGFYSVYLGAD 694
            +F+ EV +L+D++I+SLYSNKDIFLRELISNASDA+DK+ F S  +  V+ EG+  + +I++  DK+   L+IRD G+GMT E++ KN+GTIA SGT AF   +++   +    LIGQFGVGFY+ ++ AD
Sbjct:    7 KFETEVQQLLDLVIHSLYSNKDIFLRELISNASDAIDKVLFESHQNAAVI-EGE-PEGKIKLIPDKDAGTLTIRDNGVGMTLEEVEKNIGTIAHSGTKAFLANLKEQNVADHPELIGQFGVGFYASFMVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_METEP (Chaperone protein htpG OS=Methylobacterium extorquens (strain PA1) GN=htpG PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.464e-27
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV----EKMQTSGD---LNLIGQFGVGFYSVYLGAD 694
            +    E+ EF AEV RL+D+++++LYS+++IFLREL++NA+DA D+ RF +LT++ +    D     + I  DK  + L+I D GIGM+KEDL +NLGTIA+SGT AF     E+    G+    +LIGQFGVGFYS ++ AD
Sbjct:    1 MSETVERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADATDRRRFEALTNEALALPSD---ARVLIAPDKAARTLTISDAGIGMSKEDLAQNLGTIARSGTRAFSQALGERAAEGGEDQRPSLIGQFGVGFYSAFMVAD 140          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_METC4 (Chaperone protein htpG OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=htpG PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.464e-27
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV----EKMQTSGD---LNLIGQFGVGFYSVYLGAD 694
            +    E+ EF AEV RL+D+++++LYS+++IFLREL++NA+DA D+ RF +LT++ +    D     + I  DK  + L+I D GIGM+KEDL +NLGTIA+SGT AF     E+    G+    +LIGQFGVGFYS ++ AD
Sbjct:    1 MSETVERHEFGAEVGRLLDLVVHALYSDREIFLRELVANAADATDRRRFEALTNEALALPSD---ARVLIAPDKAARTLTISDAGIGMSKEDLAQNLGTIARSGTRAFSQALGERAAEGGEDQRPSLIGQFGVGFYSAFMVAD 140          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_GEOMG (Chaperone protein htpG OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.912e-27
Identity = 67/131 (51.15%), Postives = 97/131 (74.05%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF---VEKMQTSGDLNLIGQFGVGFYSVYLGAD 694
            +F+ EV +L+D++I+SLYSNKDIFLRELISN+SDA+DK+ F +  +  V+ EG+  + +I++  DKE   ++IRD G+GMT E++ KN+GTIA SGT AF   +++   S    LIGQFGVGFY+ ++ AD
Sbjct:    7 KFETEVQQLLDLVIHSLYSNKDIFLRELISNSSDAIDKVLFEAHQNAAVI-EGE-PEGKIKLIPDKEAGTITIRDNGVGMTMEEVEKNIGTIAHSGTKAFLANLKEQNVSEHPELIGQFGVGFYASFMVAD 135          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_DESVH (Chaperone protein htpG OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.497e-27
Identity = 65/137 (47.45%), Postives = 96/137 (70.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV------EKMQTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            F+ EV +++ II +SLY+N++IFLREL+SNASDALDK+RF+      V+    +    I I +DKE +IL+I D G+GMT+++L+ NLGTIA+SG+  FV      E  + +   ++IG+FGVGFY+V++ AD  EV
Sbjct:   10 FRTEVRKMLHIITHSLYTNREIFLRELVSNASDALDKLRFIRSRGDAVV--APDLAPGIDISVDKEARILTIADTGVGMTRQELMDNLGTIARSGSEQFVADLAAAENAKDADAASIIGRFGVGFYAVFMVADRVEV 144          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BUCBP (Chaperone protein htpG OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=htpG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.261e-27
Identity = 65/134 (48.51%), Postives = 95/134 (70.90%), Query Frame = 2
Query:  290 RNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDL--NLIGQFGVGFYSVYL 685
            +N  + + F++E   L+ ++I+SLYSN++IF RELISNA+DA+DK++F +++  E L E D T L I+I  +K    L+I D GIGM  ED+I NLGTIAKSGT  F++ +  +  +  +LIGQFGVGFYS ++
Sbjct:    5 KNQKKTYNFKSETKELLHLMIHSLYSNREIFFRELISNAADAIDKLKFNAISAPE-LYEND-TNLYIRIFSNKNNNSLTISDNGIGMKYEDIINNLGTIAKSGTKEFIKTLNKNNKIKNDLIGQFGVGFYSSFI 136          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_RHOPS5.031e-2851.13Chaperone protein htpG OS=Rhodopseudomonas palustr... [more]
HTPG_METNO5.031e-2848.55Chaperone protein htpG OS=Methylobacterium nodulan... [more]
HTPG_METPB8.582e-2848.25Chaperone protein htpG OS=Methylobacterium populi ... [more]
HTPG_PSEA61.121e-2750.38Chaperone protein htpG OS=Pseudoalteromonas atlant... [more]
HTPG_GEOSL1.121e-2751.91Chaperone protein htpG OS=Geobacter sulfurreducens... [more]
HTPG_METEP1.464e-2747.55Chaperone protein htpG OS=Methylobacterium extorqu... [more]
HTPG_METC41.464e-2747.55Chaperone protein htpG OS=Methylobacterium chlorom... [more]
HTPG_GEOMG1.912e-2751.15Chaperone protein htpG OS=Geobacter metallireducen... [more]
HTPG_DESVH2.497e-2747.45Chaperone protein htpG OS=Desulfovibrio vulgaris (... [more]
HTPG_BUCBP3.261e-2748.51Chaperone protein htpG OS=Buchnera aphidicola subs... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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