FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15423 contig Ccv1_Contig15423:43..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP82_ENCCU (Heat shock protein 90 OS=Encephalitozoon cuniculi GN=HSP90 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.259e-27
Identity = 67/147 (45.58%), Postives = 103/147 (70.07%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIR--FLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD----LNLIGQFGVGFYSVYLGADYXEVI*QH 718
            ++E   F+ +V+++MD +I S+YS+K++FLREL+SN+SDA DK++  +  L +K  + +   T L I+I  +K+ + L+I+D GIGMTK DL+  +GTIA SGT  F E+M+  G+     NLIGQFG+GFYS YL A+  ++I +H
Sbjct:   17 HSETHGFEVDVNQMMDTMIKSVYSSKELFLRELVSNSSDACDKLKALYFQLREKGCVLD-PVTSLGIEIIPNKDNRTLTIKDNGIGMTKPDLMNFIGTIASSGTKKFREEMKEKGNSADASNLIGQFGLGFYSSYLVAERVDLITKH 162          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RHIEC (Chaperone protein htpG OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.618e-26
Identity = 59/145 (40.69%), Postives = 102/145 (70.34%), Query Frame = 2
Query:  284 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM---QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            ++   AE   F+A+V+RL+ ++++S+YS+K +FLRELISN +DA +K+R+ ++    +L    + +  I ++LD+E + L + D GIGM ++++I+ LGTIA+SGT AF+E++   + +     IGQFGVGFYS ++ A++ +VI
Sbjct:    4 TVEQTAESHVFEADVARLLHMMVHSVYSDKGVFLRELISNGADACEKLRYEAIETPSLLAA--DAESRIMLRLDEESRQLVVEDNGIGMRRDEMIEALGTIARSGTRAFMERIAENKAAEGAQFIGQFGVGFYSCFMVAEHVDVI 146          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: H90B3_HUMAN (Putative heat shock protein HSP 90-beta-3 OS=Homo sapiens GN=HSP90AB3P PE=5 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.986e-25
Identity = 62/108 (57.41%), Postives = 82/108 (75.93%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ 625
            E F FQAE+++L+ +IIN+ YSN++IFL+ELISNASDALDKIR+ SLTD   L  G   +L+I I  + +++ L++ D GIGMTK DLI NL TIAKSGT A +E +Q
Sbjct:   13 ETFAFQAEIAQLISLIINTFYSNEEIFLQELISNASDALDKIRYESLTDPSKLDSG--KELKIDIIPNPQERTLALVDTGIGMTKADLINNLRTIAKSGTKACMEALQ 118          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: H90B2_HUMAN (Putative heat shock protein HSP 90-beta 2 OS=Homo sapiens GN=HSP90AB2P PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.819e-24
Identity = 64/120 (53.33%), Postives = 83/120 (69.17%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAK-SGTSAFVEKMQTSGDLNLIGQF 658
            E F FQAE+++LM +IIN+ YSNK+IFL ELISNASDALDKIR+ SLTD   L  G   +L+I I  + ++  L++ D GIGMTK DLI NLGTIAK    + ++E+MQ    +    QF
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESLTDPSKLDSG--KELKIDIIPNTQEHTLTLVDTGIGMTKADLINNLGTIAKFQDQTEYLEEMQVKEVVEKHSQF 130          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BACTN (Chaperone protein htpG OS=Bacteroides thetaiotaomicron GN=htpG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.285e-15
Identity = 50/136 (36.76%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +K         +  II   LYS+ +IFLREL+SNA DA  K+  L+      +GE      ++ I ++  K  ++I DRGIG+T E++ K +  IA SG + F+EK +   +  +IG FG+GFYS ++ A   E+I
Sbjct:    2 QKGNIGVTTENIFPIIKKFLYSDHEIFLRELVSNAVDATQKLNTLAS-----IGEFKGELGDLTIHVELGKDTITISDRGIGLTAEEIEKYINQIAFSGANDFLEKYKDDANA-IIGHFGLGFYSAFMVAKKVEII 131          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PORGI (Chaperone protein htpG OS=Porphyromonas gingivalis GN=htpG PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.193e-15
Identity = 43/125 (34.40%), Postives = 77/125 (61.60%), Query Frame = 2
Query:  335 LMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +  +I   LYS+ +IFLRE++SNA DA  K++ L+   +    +G+   L + + +D+  + +++ DRG+GMT+E++ K +  IA S    F+EK +      +IG FG+GFYS ++ ++  +VI
Sbjct:   14 IFPVIKKFLYSDHEIFLREIVSNAVDATQKLKTLTSVGEF---KGETGDLRVTVSVDEVARTITVSDRGVGMTEEEVEKYINQIAFSSAEEFLEKYK-DDKAAIIGHFGLGFYSAFMVSERVDVI 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS904_HUMAN (Putative heat shock protein HSP 90-alpha A4 OS=Homo sapiens GN=HSP90AA4P PE=5 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.193e-15
Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  437 SLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            SLTD   L  G      I +  +K+ + L+I D GIGMTK DLI NLGTI KS T  F+E +Q   D+++IGQF VGFYS Y  A+   VI +H
Sbjct:    3 SLTDPSKLDSGKEP--HISLIPNKQDRTLTIVDTGIGMTKADLINNLGTITKSETKVFMEVLQAGADISMIGQFSVGFYSAYSVAEKVTVITKH 94          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BACFR (Chaperone protein htpG OS=Bacteroides fragilis GN=htpG PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 53/137 (38.69%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGE-GDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +K         +  II   LYS+ +IFLREL+SNA DA  K+  L+ +  E  GE GD   L + + L K+   ++I DRGIG+T E++ K +  IA SG + F+EK +   +  +IG FG+GFYS ++ +   E+I
Sbjct:    2 QKGNIGVTTENIFPIIKKFLYSDHEIFLRELVSNAVDATQKLNTLA-SISEFKGELGD---LTVHVSLGKDT--ITISDRGIGLTAEEIDKYINQIAFSGANDFLEKYKNDANA-IIGHFGLGFYSAFMVSKKVEII 131          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_BACFN (Chaperone protein htpG OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=htpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.740e-15
Identity = 53/137 (38.69%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGE-GDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +K         +  II   LYS+ +IFLREL+SNA DA  K+  L+ +  E  GE GD   L + + L K+   ++I DRGIG+T E++ K +  IA SG + F+EK +   +  +IG FG+GFYS ++ +   E+I
Sbjct:    2 QKGNIGVTTENIFPIIKKFLYSDHEIFLRELVSNAVDATQKLNTLA-SISEFKGELGD---LTVHVSLGKDT--ITISDRGIGLTAEEIDKYINQIAFSGANDFLEKYKNDANA-IIGHFGLGFYSAFMVSKKVEII 131          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PORG3 (Chaperone protein htpG OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=htpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.884e-15
Identity = 43/125 (34.40%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  335 LMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +  +I   LYS+  IFLRE++SNA DA  K++ L+   +    +G+   L + + +D+  + +++ DRG+GMT+E++ K +  IA S    F+EK +      +IG FG+GFYS ++ ++  +VI
Sbjct:   14 IFPVIKKFLYSDHKIFLREIVSNAVDATQKLKTLTSVGEF---KGETGDLRVTVSVDEVARTITVSDRGVGMTEEEVEKYINQIAFSSAEEFLEKYK-DDKAAIIGHFGLGFYSAFMVSERVDVI 134          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HSP82_ENCCU4.259e-2745.58Heat shock protein 90 OS=Encephalitozoon cuniculi ... [more]
HTPG_RHIEC1.618e-2640.69Chaperone protein htpG OS=Rhizobium etli (strain C... [more]
H90B3_HUMAN3.986e-2557.41Putative heat shock protein HSP 90-beta-3 OS=Homo ... [more]
H90B2_HUMAN9.819e-2453.33Putative heat shock protein HSP 90-beta 2 OS=Homo ... [more]
HTPG_BACTN1.285e-1536.76Chaperone protein htpG OS=Bacteroides thetaiotaomi... [more]
HTPG_PORGI2.193e-1534.40Chaperone protein htpG OS=Porphyromonas gingivalis... [more]
HS904_HUMAN2.193e-1548.94Putative heat shock protein HSP 90-alpha A4 OS=Hom... [more]
HTPG_BACFR3.740e-1538.69Chaperone protein htpG OS=Bacteroides fragilis GN=... [more]
HTPG_BACFN3.740e-1538.69Chaperone protein htpG OS=Bacteroides fragilis (st... [more]
HTPG_PORG34.884e-1534.40Chaperone protein htpG OS=Porphyromonas gingivalis... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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