FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15423 contig Ccv1_Contig15423:43..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.843e-38
Identity = 84/139 (60.43%), Postives = 106/139 (76.26%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ SLTD   L  G   +L+I I  + +++ L++ D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL A+   VI +H
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGK--ELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKH 149          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 159.458 bits (402), Expect = 1.843e-38
Identity = 84/139 (60.43%), Postives = 106/139 (76.26%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ SLTD   L  G   +L+I I  + +++ L++ D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL A+   VI +H
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGK--ELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKH 149          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.843e-38
Identity = 84/139 (60.43%), Postives = 106/139 (76.26%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ SLTD   L  G   +L+I I  + +++ L++ D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL A+   VI +H
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGK--ELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKH 149          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS90A_MOUSE (Heat shock protein HSP 90-alpha OS=Mus musculus GN=Hsp90aa1 PE=1 SV=4)

HSP 1 Score: 159.458 bits (402), Expect = 1.843e-38
Identity = 84/139 (60.43%), Postives = 104/139 (74.82%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L  G   +L I +   K+ + L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL A+   VI +H
Sbjct:   18 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK--ELHINLIPSKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKH 154          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS90A_CRIGR (Heat shock protein HSP 90-alpha OS=Cricetulus griseus GN=HSP90AA1 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.843e-38
Identity = 84/139 (60.43%), Postives = 105/139 (75.54%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L  G   +L I I  +K+ + L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++IGQFGVGFY+ YL A+   VI +H
Sbjct:   18 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK--ELHINIIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYTAYLVAEKVTVITKH 154          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.407e-38
Identity = 83/139 (59.71%), Postives = 106/139 (76.26%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ SLTD   L  G   +L+I I  + +++ L++ D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL A+   VI +H
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGK--ELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKH 149          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 3.144e-38
Identity = 84/141 (59.57%), Postives = 105/141 (74.47%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            +AE F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF SLTDK  L      +L I++  DK  K LSI D GIGMTK DL+ NLGTIA+SGT  F+E +Q   D+++IGQFGVGFYS YL A+   V  +H
Sbjct:    3 DAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD--GQPELFIRLVPDKSNKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVVVTTKH 141          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS90A_CHICK (Heat shock protein HSP 90-alpha OS=Gallus gallus GN=HSP90AA1 PE=3 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 3.144e-38
Identity = 84/153 (54.90%), Postives = 108/153 (70.59%), Query Frame = 2
Query:  260 EAESISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            EA     + +    E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ SLTD   L  G +  L+I +  +K  + L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++IGQFGVG YS YL A+   VI +H
Sbjct:    3 EAVQTQDQPMEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKD--LKINLIPNKHDRTLTIVDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGSYSAYLVAEKVTVITKH 153          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP90_EIMTE (Heat shock protein 90 OS=Eimeria tenella GN=HSP90 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.106e-38
Identity = 83/143 (58.04%), Postives = 106/143 (74.13%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL--DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            N E F F A++ +LM +IIN+ YSNK+IFLRELISNASDALDKIR+ ++T+ E L     TK E+ I+L  DK    L+I + GIGMTK DL+ NLGTIA+SGT AF+E +Q  GD+++IGQFGVGFYS YL AD   V+ +H
Sbjct:    3 NKETFAFNADIQQLMSLIINTFYSNKEIFLRELISNASDALDKIRYEAITEPEKL----KTKPELFIRLIPDKANNTLTIENSGIGMTKADLVNNLGTIARSGTKAFMEALQAGGDISMIGQFGVGFYSAYLVADSVTVVSKH 141          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 5.363e-38
Identity = 83/141 (58.87%), Postives = 105/141 (74.47%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            N E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKIR+ +LT+   L  G   +L I+I  +K  K L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS +L AD   V  +H
Sbjct:    6 NGETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYQALTEPAELETGK--ELYIKITPNKADKTLTIMDTGIGMTKADLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAFLVADKVVVASKH 144          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HS90B_MACFA1.843e-3860.43Heat shock protein HSP 90-beta OS=Macaca fascicula... [more]
HS90B_HUMAN1.843e-3860.43Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
HS90B_HORSE1.843e-3860.43Heat shock protein HSP 90-beta OS=Equus caballus G... [more]
HS90A_MOUSE1.843e-3860.43Heat shock protein HSP 90-alpha OS=Mus musculus GN... [more]
HS90A_CRIGR1.843e-3860.43Heat shock protein HSP 90-alpha OS=Cricetulus gris... [more]
HS90B_BOVIN2.407e-3859.71Heat shock protein HSP 90-beta OS=Bos taurus GN=HS... [more]
HSP81_ARATH3.144e-3859.57Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]
HS90A_CHICK3.144e-3854.90Heat shock protein HSP 90-alpha OS=Gallus gallus G... [more]
HSP90_EIMTE4.106e-3858.04Heat shock protein 90 OS=Eimeria tenella GN=HSP90 ... [more]
HSP90_BRUPA5.363e-3858.87Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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