FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15423 contig Ccv1_Contig15423:43..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: ENPL_RABIT (Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.476e-37
Identity = 83/138 (60.14%), Postives = 104/138 (75.36%), Query Frame = 2
Query:  320 AEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGD-----LNLIGQFGVGFYSVYLGADYXEVI*QH 718
            AEV+R+M +IINSLY NK+IFLRELISNASDALDKIR +SLTD++ L    N +L ++IK DKEK +L + D G+GMT+E+L+KNLGTIAKSGTS F+ KM  + +       LIGQFGVGFYS +L AD   V  +H
Sbjct:    1 AEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEQAL--SGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKH 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.929e-37
Identity = 83/141 (58.87%), Postives = 102/141 (72.34%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            +AE F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF SLTDK  L      +L I I  DK    L+I D GIGMTK DL+ NLGTIA+SGT  F+E +    D+++IGQFGVGFYS YL AD   V  +H
Sbjct:    3 DAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD--GQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVADKVVVTTKH 141          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.929e-37
Identity = 83/141 (58.87%), Postives = 102/141 (72.34%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            +AE F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF SLTDK  L      +L I I  DK    L+I D GIGMTK DL+ NLGTIA+SGT  F+E +    D+++IGQFGVGFYS YL AD   V  +H
Sbjct:    3 DAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD--GQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVADKVVVTTKH 141          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HS902_HUMAN (Putative heat shock protein HSP 90-alpha A2 OS=Homo sapiens GN=HSP90AA2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.744e-37
Identity = 82/139 (58.99%), Postives = 103/139 (74.10%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E F FQAE+++LM +IIN+ YSNK+IFLRELISN+SDALDKI + SLTD   L  G   +L I +  +K+ + L+I D GIGMTK DLI NLGTIAKSGT AF+E +Q   D+++IGQFGV FYS YL A+   VI +H
Sbjct:   18 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIWYESLTDPSKLDSGK--ELHINLIPNKQDQTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVSFYSAYLVAEKVTVITKH 154          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.011e-36
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            + +  E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF SLTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E +    D+++IGQFGVGFYS YL A+   V  +H
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKH 142          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.011e-36
Identity = 82/144 (56.94%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            + +  E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF SLTDK  L      +L I I  DK    LSI D GIGMTK DL+ NLGTIA+SGT  F+E +    D+++IGQFGVGFYS YL A+   V  +H
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKH 142          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.321e-36
Identity = 81/144 (56.25%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            + +  E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF SLTDK  L      +L I I  DK    LSI D G+GMTK DL+ NLGTIA+SGT  F+E +    D+++IGQFGVGFYS YL A+   V  +H
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKH 142          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.321e-36
Identity = 81/144 (56.25%), Postives = 102/144 (70.83%), Query Frame = 2
Query:  287 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            + +  E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF SLTDK  L      +L I I  DK    LSI D G+GMTK DL+ NLGTIA+SGT  F+E +    D+++IGQFGVGFYS YL A+   V  +H
Sbjct:    1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA--QPELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAERVVVTTKH 142          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.843e-36
Identity = 81/142 (57.04%), Postives = 102/142 (71.83%), Query Frame = 2
Query:  293 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            ++ E F FQAE+++L+ +IIN+ YSNK+IFLRELISN+SDALDKIRF SLTDK  L      +L I I  DK    L+I D GIGMTK DL+ NLGTIA+SGT  F+E +    D+++IGQFGVGFYS YL A+   V  +H
Sbjct:    2 SDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLD--GQPELFIHIIPDKANNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVVVTTKH 141          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP82_MAIZE (Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.020e-36
Identity = 84/142 (59.15%), Postives = 104/142 (73.24%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL--DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSG-DLNLIGQFGVGFYSVYLGADYXEVI*QH 718
            E F FQAE+++L+ +IIN+ YSNK+IFLRELISNASDALDKIRF SLTDK  +    N + E+ I+L  DK  K LSI D G+GMTK DL+ NLGTIA+SGT  F+E +     D+++IGQFGVGFYS YL AD   V  +H
Sbjct:   15 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSNV----NAQPELFIRLVPDKASKTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALAAGATDVSMIGQFGVGFYSAYLVADRVMVTTKH 152          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
ENPL_RABIT3.476e-3760.14Endoplasmin (Fragment) OS=Oryctolagus cuniculus GN... [more]
HSP83_ARATH5.929e-3758.87Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP82_ARATH5.929e-3758.87Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HS902_HUMAN7.744e-3758.99Putative heat shock protein HSP 90-alpha A2 OS=Hom... [more]
HSP81_ORYSJ1.011e-3656.94Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI1.011e-3656.94Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_ORYSJ1.321e-3656.25Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ1.321e-3656.25Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP80_SOLLC3.843e-3657.04Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP82_MAIZE5.020e-3659.15Heat shock protein 82 OS=Zea mays GN=HSP82 PE=3 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
back to top