FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15423 contig Ccv1_Contig15423:43..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.249e-35
Identity = 76/138 (55.07%), Postives = 107/138 (77.54%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVL-GEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            E  EFQAEV +L+ ++I+SLYSNKDIFLRELISNASDA+DK+RF SL D+ +L GEGD   L I++ +DK+ + +++ D GIGMT++++ +NLGTIA+SGT AF++++      D  LIGQFGVGFYS ++ A++  V
Sbjct:    8 ETLEFQAEVQQLLHLMIHSLYSNKDIFLRELISNASDAIDKLRFQSLQDESLLEGEGD---LRIRVSVDKDARTITVADNGIGMTRDEVAENLGTIARSGTKAFLDQLTGDQQKDAKLIGQFGVGFYSAFVVAEHVTV 142          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP90_THEPA (Heat shock protein 90 OS=Theileria parva GN=TP02_0244 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.249e-35
Identity = 75/136 (55.15%), Postives = 99/136 (72.79%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            E + F A++S+L+ +IIN+ YSNK+IFLRELISNASDAL+KIR+ ++ D + +   D     I++  DK    L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL AD   V+
Sbjct:   11 EVYAFNADISQLLSLIINAFYSNKEIFLRELISNASDALEKIRYEAIKDPKQIE--DQPDYYIRLYADKNNNTLTIEDSGIGMTKADLVNNLGTIAKSGTRAFMEALQAGSDMSMIGQFGVGFYSAYLVADKVTVV 144          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP90_THEAN (Heat shock protein 90 OS=Theileria annulata GN=TA12105 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.249e-35
Identity = 75/136 (55.15%), Postives = 99/136 (72.79%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            E + F A++S+L+ +IIN+ YSNK+IFLRELISNASDAL+KIR+ ++ D + +   D     I++  DK    L+I D GIGMTK DL+ NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL AD   V+
Sbjct:   11 EVYAFNADISQLLSLIINAFYSNKEIFLRELISNASDALEKIRYEAIKDPKQIE--DQPDYYIRLYADKNNNTLTIEDSGIGMTKADLVNNLGTIAKSGTRAFMEALQAGSDMSMIGQFGVGFYSAYLVADKVTVV 144          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 76/139 (54.68%), Postives = 104/139 (74.82%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSG---DLNLIGQFGVGFYSVYLGADYXEVI 709
            E   FQAE+++L+ ++INSLYS+K+IFLREL+SNASDALDK+RF ++T+ E+L   D   LE+++  D+ K  L+I D GIGM+ ++L+KNLGTIA SG+  F+E +   G   D+ LIGQFGVGFYS YL AD  EV+
Sbjct:   10 ETHAFQAEINQLLSLVINSLYSHKEIFLRELVSNASDALDKLRFRAITEPELL--ADEPALELRLIPDEAKGTLTIEDTGIGMSHDELVKNLGTIAHSGSREFIEALAQKGQQKDMQLIGQFGVGFYSAYLVADRVEVV 146          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJR (Chaperone protein htpG OS=Campylobacter jejuni (strain RM1221) GN=htpG PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +FQ EV++L+ ++I+SLYSNK+IFLRELISNASDALDK+ FLS++D +        K+E  IK+DK+KK LSI D GIGM K+DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++ A   EV+
Sbjct:    2 QFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIE--IKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVL 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJJ (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=htpG PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +FQ EV++L+ ++I+SLYSNK+IFLRELISNASDALDK+ FLS++D +        K+E  IK+DK+KK LSI D GIGM K+DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++ A   EV+
Sbjct:    2 QFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIE--IKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVL 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJE (Chaperone protein htpG OS=Campylobacter jejuni GN=htpG PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +FQ EV++L+ ++I+SLYSNK+IFLRELISNASDALDK+ FLS++D +        K+E  IK+DK+KK LSI D GIGM K+DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++ A   EV+
Sbjct:    2 QFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIE--IKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVL 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJ8 (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=htpG PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +FQ EV++L+ ++I+SLYSNK+IFLRELISNASDALDK+ FLS++D +        K+E  IK+DK+KK LSI D GIGM K+DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++ A   EV+
Sbjct:    2 QFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIE--IKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVL 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_SULNB (Chaperone protein htpG OS=Sulfurovum sp. (strain NBC37-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.248e-35
Identity = 78/137 (56.93%), Postives = 103/137 (75.18%), Query Frame = 2
Query:  305 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            K +FQ E+ +L+ ++ +SLYSNK+IF+RELISNASDALDK  +LSLTD++   + +N   +I IKLDK+   L+I D GIGM +EDL+ NLGTIAKSGT AF+E +      D NLIGQFGVGFYSV++ A+  +VI
Sbjct:    3 KHQFQTEIGQLLKLMTHSLYSNKEIFIRELISNASDALDKFNYLSLTDEKF--KEENWSGKISIKLDKDDNSLTIGDNGIGMNEEDLMDNLGTIAKSGTKAFMENLTGDAKKDSNLIGQFGVGFYSVFMVAEKVDVI 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJD (Chaperone protein htpG OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=htpG PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.466e-35
Identity = 79/135 (58.52%), Postives = 100/135 (74.07%), Query Frame = 2
Query:  311 EFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            +FQ EV++L+ ++I+SLYSNK+IFLRELISNASDALDK+ FLS++D +        K+E  IK+DK+KK LSI D GIGM K DLI NLGTIAKSGT +F+E +      D  LIGQFGVGFYS ++ A   EV+
Sbjct:    2 QFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLSVSDDKYKSLKFEPKIE--IKIDKDKKTLSISDNGIGMDKNDLINNLGTIAKSGTKSFLENLSGDAKKDSQLIGQFGVGFYSAFMVASKIEVL 134          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_ALHEH4.249e-3555.07Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]
HSP90_THEPA4.249e-3555.15Heat shock protein 90 OS=Theileria parva GN=TP02_0... [more]
HSP90_THEAN4.249e-3555.15Heat shock protein 90 OS=Theileria annulata GN=TA1... [more]
HTPG_MYXXD5.550e-3554.68Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
HTPG_CAMJR5.550e-3558.52Chaperone protein htpG OS=Campylobacter jejuni (st... [more]
HTPG_CAMJJ5.550e-3558.52Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJE5.550e-3558.52Chaperone protein htpG OS=Campylobacter jejuni GN=... [more]
HTPG_CAMJ85.550e-3558.52Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_SULNB7.248e-3556.93Chaperone protein htpG OS=Sulfurovum sp. (strain N... [more]
HTPG_CAMJD9.466e-3558.52Chaperone protein htpG OS=Campylobacter jejuni sub... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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