FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15423 contig Ccv1_Contig15423:43..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_RHORT (Chaperone protein htpG OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=htpG PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.109e-34
Identity = 78/141 (55.32%), Postives = 103/141 (73.05%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ-----TSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            E   FQAEVS+L+DI+++SLYS++ IFLRELISNASDA DK+R+  LT   +L EGD     I++ +D E   L+I D GIGM + +LI+NLGTIA+SGT AF E ++      SGD++LIGQFGVGFYS ++ AD  EV+
Sbjct:    4 ETLSFQAEVSKLLDIVVHSLYSDRKIFLRELISNASDACDKLRYEGLTQPALL-EGDGA-FRIRLSIDAEAGTLTIADNGIGMNRHELIENLGTIARSGTQAFAEALKAKSQAASGDVSLIGQFGVGFYSAFMVADKVEVV 142          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_NEOSM (Chaperone protein htpG OS=Neorickettsia sennetsu (strain Miyayama) GN=htpG PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.698e-34
Identity = 74/133 (55.64%), Postives = 105/133 (78.95%), Query Frame = 2
Query:  308 FEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            + F A+ S++++++I+SLY +KD+FLRELISNASDAL+K+R  S  D+E+L   DN +LEI I L+KEKKIL I D GIGM +++L++NLGT+A+SGT  F+E ++    ++LIGQFGVGFYSV++ AD  EV
Sbjct:   10 YSFDADASKVLNLVIHSLYRHKDVFLRELISNASDALNKLREASYFDQELL--EDNPELEILISLNKEKKILEISDNGIGMDEKELVENLGTVARSGTEKFLESLKDK-KVDLIGQFGVGFYSVFMVADKVEV 139          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_DESHY (Chaperone protein htpG OS=Desulfitobacterium hafniense (strain Y51) GN=htpG PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.136e-34
Identity = 74/134 (55.22%), Postives = 103/134 (76.87%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSG---DLNLIGQFGVGFYSVYLGAD 694
            E  EFQ E+ +L+DI+INSLY++++IFLRELISNA+DA +K+R++ L+ + V  +     LEI+I  D+  K L+I D GIGMTKEDLI+N+GTIA SG+ AFV+++  +G   D+NLIGQFGVGFYS ++ AD
Sbjct:    5 ETKEFQTEIRQLLDIVINSLYTDREIFLRELISNAADASEKVRYMQLSGQNV--KDQELPLEIRITPDENAKTLTIADAGIGMTKEDLIENIGTIAHSGSKAFVQRLAEAGDKKDVNLIGQFGVGFYSAFMVAD 136          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_WIGBR (Chaperone protein htpG OS=Wigglesworthia glossinidia brevipalpis GN=htpG PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.014e-34
Identity = 75/131 (57.25%), Postives = 105/131 (80.15%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF---VEKMQTSGDLNLIGQFGVGFYSVYL 685
            E  EFQ+EV +L++++I+SLYSNK+IFLRELISNASDALDK+RFLS++D+++  +    KL I I  DK KK ++I+D GIGM+K+++I+NLGTIAKSGT +F   +EK  +  +  LIG+FGVGFYSV++
Sbjct:    5 ETLEFQSEVKQLLNLMIHSLYSNKEIFLRELISNASDALDKLRFLSISDEKI--KIKQNKLCIFIDYDKNKKSITIQDNGIGMSKKEVIENLGTIAKSGTKSFIKSIEKSNSEKNNQLIGKFGVGFYSVFI 133          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_ARCB4 (Chaperone protein htpG OS=Arcobacter butzleri (strain RM4018) GN=htpG PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.047e-33
Identity = 75/137 (54.74%), Postives = 100/137 (72.99%), Query Frame = 2
Query:  305 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            K +FQ EV +L+ ++ +SLYSNK+IF+REL+SNASDA+DK+ +L LTD+ +  +    K EI I  D++ K LSI D GIGM + DLI ++GTIAKSGT +FVE +      D NLIGQFGVGFYSV++ AD  +VI
Sbjct:    3 KHQFQTEVGQLLHLMTHSLYSNKEIFIRELVSNASDAIDKLNYLRLTDENLKDKYAQWKGEINISFDEKDKSLSIIDNGIGMNEADLIASIGTIAKSGTKSFVEALTGDAKKDSNLIGQFGVGFYSVFMVADKVDVI 139          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HSP83_DROPB (Heat shock protein 83 (Fragment) OS=Drosophila pseudoobscura bogotana GN=Hsp83 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.047e-33
Identity = 78/132 (59.09%), Postives = 93/132 (70.45%), Query Frame = 2
Query:  299 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLGAD 694
            AE F FQAE+++LM +IIN+ YSNK+IFLRELISNASDALDKIR+ S TD   L              +K    L+I D GI MTK DL+ NLGTIAKSGT AF+E +Q   D+++IGQFGVGFYS YL AD
Sbjct:    5 AETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYXSXTDPXKLXXXXXXXXXXIP--NKTAGTLTIIDTGIXMTKSDLVNNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLIAD 134          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_YERPS (Chaperone protein htpG OS=Yersinia pseudotuberculosis GN=htpG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 75/129 (58.14%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++ E L EGD  +L +++  DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPE-LFEGDG-ELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVAD 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_YERPP (Chaperone protein htpG OS=Yersinia pestis (strain Pestoides F) GN=htpG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 75/129 (58.14%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++ E L EGD  +L +++  DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPE-LFEGDG-ELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVAD 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_YERPN (Chaperone protein htpG OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=htpG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 75/129 (58.14%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++ E L EGD  +L +++  DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPE-LFEGDG-ELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVAD 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_YERPE (Chaperone protein htpG OS=Yersinia pestis GN=htpG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 75/129 (58.14%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++ E L EGD  +L +++  DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:    9 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPE-LFEGDG-ELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVAD 135          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_RHORT2.109e-3455.32Chaperone protein htpG OS=Rhodospirillum rubrum (s... [more]
HTPG_NEOSM4.698e-3455.64Chaperone protein htpG OS=Neorickettsia sennetsu (... [more]
HTPG_DESHY6.136e-3455.22Chaperone protein htpG OS=Desulfitobacterium hafni... [more]
HTPG_WIGBR8.014e-3457.25Chaperone protein htpG OS=Wigglesworthia glossinid... [more]
HTPG_ARCB41.047e-3354.74Chaperone protein htpG OS=Arcobacter butzleri (str... [more]
HSP83_DROPB1.047e-3359.09Heat shock protein 83 (Fragment) OS=Drosophila pse... [more]
HTPG_YERPS1.785e-3358.14Chaperone protein htpG OS=Yersinia pseudotuberculo... [more]
HTPG_YERPP1.785e-3358.14Chaperone protein htpG OS=Yersinia pestis (strain ... [more]
HTPG_YERPN1.785e-3358.14Chaperone protein htpG OS=Yersinia pestis bv. Anti... [more]
HTPG_YERPE1.785e-3358.14Chaperone protein htpG OS=Yersinia pestis GN=htpG ... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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