FC875560

Overview
NameFC875560
Unique NameFC875560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length751
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_YERPA (Chaperone protein htpG OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=htpG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 75/129 (58.14%), Postives = 102/129 (79.07%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L++ E L EGD  +L +++  DKEK+ L++ D GIGMT++++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPE-LFEGDG-ELRVRLSFDKEKRTLTLSDNGIGMTRDEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVAD 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_HELPJ (Chaperone protein htpG OS=Helicobacter pylori J99 GN=htpG PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.785e-33
Identity = 73/132 (55.30%), Postives = 101/132 (76.52%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGA 691
            +++ FQ E+++L+D++I+SLYSNK+IFLRELISNASDALDK+ +L LTD+++  +G NT   I +  D +KK L+I+D GIGM K DLI++LGTIAKSGT +F+  +      D  LIGQFGVGFYS ++ A
Sbjct:    4 QEYTFQTEINQLLDLMIHSLYSNKEIFLRELISNASDALDKLNYLMLTDEKL--KGLNTTPSIHLSFDSQKKTLTIKDNGIGMDKSDLIEHLGTIAKSGTKSFLSALSGDKKKDSALIGQFGVGFYSAFMVA 133          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PSEU2 (Chaperone protein htpG OS=Pseudomonas syringae pv. syringae (strain B728a) GN=htpG PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.332e-33
Identity = 76/156 (48.72%), Postives = 109/156 (69.87%), Query Frame = 2
Query:  284 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI*QHMMTTVCMGI 745
            S+    E   FQ EV +L+ ++I+SLYSNK+IFLRELISNASDA+DK+RF +L+  E+L  G   +L+I++  DK+ K +++ D GIGM++ED+I +LGTIAKSGT+ F++ +      D +LIGQFGVGFYS ++ AD  EV  +   T    G+
Sbjct:    2 SVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGG--AELKIRVSFDKDAKTVTLEDNGIGMSREDVITHLGTIAKSGTADFMKNLSGDQKKDSHLIGQFGVGFYSAFIVADQVEVFSRRAGTPASEGV 155          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_YERE8 (Chaperone protein htpG OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=htpG PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.977e-33
Identity = 75/129 (58.14%), Postives = 101/129 (78.29%), Query Frame = 2
Query:  314 FQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGAD 694
            FQ+EV +L+ ++I+SLYSNK+IFLRELISNASDA DK+RF +L+  E L EGD  +L +++  DKEK+ L++ D GIGM++E++I NLGTIAKSGT AF+E +    + D  LIGQFGVGFYS ++ AD
Sbjct:   11 FQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSHPE-LFEGDG-ELRVRLSFDKEKRTLTLSDNGIGMSREEVIDNLGTIAKSGTKAFLESIGSDQAKDSQLIGQFGVGFYSAFIVAD 137          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PSE14 (Chaperone protein htpG OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=htpG PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.977e-33
Identity = 76/156 (48.72%), Postives = 109/156 (69.87%), Query Frame = 2
Query:  284 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI*QHMMTTVCMGI 745
            S+    E   FQ EV +L+ ++I+SLYSNK+IFLRELISNASDA+DK+RF +L+  E+L  G   +L+I++  DK+ K +++ D GIGM++ED+I +LGTIAKSGT+ F++ +      D +LIGQFGVGFYS ++ AD  EV  +   T    G+
Sbjct:    2 SVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGG--AELKIRVSFDKDAKTVTLEDNGIGMSREDVITHLGTIAKSGTADFMKNLSGDQKKDSHLIGQFGVGFYSAFIVADQVEVFSRRAGTPANEGV 155          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_ORITB (Chaperone protein htpG OS=Orientia tsutsugamushi (strain Boryong) GN=htpG PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.977e-33
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 2
Query:  296 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVL-GEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEVI 709
            + E ++F AEV +++ ++I++LY+NK IFLRELISNASDA DK+R+LS ++ E+L GE D    +I + +DKEK+ + ++D GIGM KEDL +NLGTIA SGT  F+E++      D  LIGQFGVGFYS Y+ AD  +VI
Sbjct:    2 SVETYKFDAEVGKVLHLVIHTLYTNKKIFLRELISNASDACDKLRYLSQSNAELLQGESD---FKITVSMDKEKRYIILQDNGIGMNKEDLTQNLGTIASSGTQKFLEQLGNDAKKDNMLIGQFGVGFYSSYMVADEVKVI 139          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: TRAP1_RAT (Heat shock protein 75 kDa, mitochondrial OS=Rattus norvegicus GN=Trap1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.194e-33
Identity = 72/143 (50.35%), Postives = 104/143 (72.73%), Query Frame = 2
Query:  284 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLN--LIGQFGVGFYSVYLGADYXEV 706
            +++ +  K EFQAE  +L+DI+  SLYS K++F+RELISNASDAL+K+R   + + +VL E     +EI ++ D EK  ++I+D GIGMTKE+L+ NLGTIA+SG+ AF+E +Q   + +  +IGQFGVGFYS ++ AD  EV
Sbjct:   82 AVQGSVSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKRVCEGQVLPE-----MEIHLQTDAEKGTITIQDTGIGMTKEELVSNLGTIARSGSKAFLEALQHQAETSSRIIGQFGVGFYSAFMVADKVEV 219          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PSEF5 (Chaperone protein htpG OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=htpG PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.194e-33
Identity = 74/143 (51.75%), Postives = 105/143 (73.43%), Query Frame = 2
Query:  284 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            S+    E   FQ EV +L+ ++I+SLYSNK+IFLRELISNASDA+DK+RF +L+  E+L  G   +L+I++  DK+ K +++ D GIGM++ED+I +LGTIAKSGT+ F++ +      D +LIGQFGVGFYS ++ AD  EV
Sbjct:    2 SVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSKPELLEGG--AELKIRVSFDKDAKTVTLEDNGIGMSREDVITHLGTIAKSGTADFMKNLTGDQKKDSHLIGQFGVGFYSAFIVADQVEV 142          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_HELPY (Chaperone protein htpG OS=Helicobacter pylori GN=htpG PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.194e-33
Identity = 72/132 (54.55%), Postives = 100/132 (75.76%), Query Frame = 2
Query:  302 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGA 691
            +++ FQ E+++L+D++I+SLYSNK+IFLREL+SNASDALDK+ +L LTD+++  +G NT   I +  D +KK L+I+D GIGM K DLI++LGTIAKSGT  F+  +      D  LIGQFGVGFYS ++ A
Sbjct:    4 QEYTFQTEINQLLDLMIHSLYSNKEIFLRELVSNASDALDKLNYLMLTDEKL--KGLNTTPSIHLSFDSQKKTLTIKDNGIGMDKNDLIEHLGTIAKSGTKNFLSALSGDKKKDSALIGQFGVGFYSAFMVA 133          
BLAST of FC875560 vs. ExPASy Swiss-Prot
Match: HTPG_PSESM (Chaperone protein htpG OS=Pseudomonas syringae pv. tomato GN=htpG PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.784e-33
Identity = 74/143 (51.75%), Postives = 105/143 (73.43%), Query Frame = 2
Query:  284 SLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKM--QTSGDLNLIGQFGVGFYSVYLGADYXEV 706
            S+    E   FQ EV +L+ ++I+SLYSNK+IFLRELISNASDA+DK+RF +L+  E+L  G   +L+I++  DK+ K +++ D GIGM++ED+I +LGTIAKSGT+ F++ +      D +LIGQFGVGFYS ++ AD  EV
Sbjct:    2 SVETQKETLGFQTEVKQLLHLMIHSLYSNKEIFLRELISNASDAVDKLRFEALSRPELLEGG--AELKIRVSFDKDAKTVTLEDNGIGMSREDVITHLGTIAKSGTADFMKNLSGDQKKDSHLIGQFGVGFYSAFIVADQVEV 142          
The following BLAST results are available for this feature:
BLAST of FC875560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 380
Match NameE-valueIdentityDescription
HTPG_YERPA1.785e-3358.14Chaperone protein htpG OS=Yersinia pestis bv. Anti... [more]
HTPG_HELPJ1.785e-3355.30Chaperone protein htpG OS=Helicobacter pylori J99 ... [more]
HTPG_PSEU22.332e-3348.72Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]
HTPG_YERE83.977e-3358.14Chaperone protein htpG OS=Yersinia enterocolitica ... [more]
HTPG_PSE143.977e-3348.72Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]
HTPG_ORITB3.977e-3353.19Chaperone protein htpG OS=Orientia tsutsugamushi (... [more]
TRAP1_RAT5.194e-3350.35Heat shock protein 75 kDa, mitochondrial OS=Rattus... [more]
HTPG_PSEF55.194e-3351.75Chaperone protein htpG OS=Pseudomonas fluorescens ... [more]
HTPG_HELPY5.194e-3354.55Chaperone protein htpG OS=Helicobacter pylori GN=h... [more]
HTPG_PSESM6.784e-3351.75Chaperone protein htpG OS=Pseudomonas syringae pv.... [more]

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Properties
Property NameValue
Genbank descriptionC31405C07EF CTVClemen1 Citrus clementina cDNA clone C31405C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875560 ID=FC875560; Name=FC875560; organism=Citrus clementina; type=EST; length=751bp
GAATAGGCAATAATTTGATCATTTTTAGCTGATCGAAGATACTAGAACTA
TACTAATTTCAAAGTTAACAATGAGGAAGTGGACAATCCCTTCCATATTG
CTTCTCCTTTTCCTTCTCGCCCTGATTCCAGATCAAGGCCGAAATATACA
GGCAAAAGCAGAGGATGAATCTGATAAACTAGTGGATCCTCCTAAGGTCG
AGGAGAAACTCGGAGCCGTACCAAATGGTTTGTCGACAGATTCTGACGTG
GCAAAGAGGGAAGCGGAGTCGATCTCGAAGAGGTCACTTCGTAATAATGC
GGAGAAATTTGAATTCCAAGCTGAGGTGTCTCGGCTCATGGATATTATCA
TCAATTCTCTTTACAGCAACAAAGATATTTTCCTCAGAGAGTTGATTTCC
AATGCTTCTGATGCACTAGACAAGATTAGATTCCTCTCTTTGACTGACAA
AGAGGTCTTGGGAGAAGGAGACAACACTAAGCTGGAGATCCAGATTAAGC
TAGACAAAGAGAAGAAAATTCTTTCAATTCGTGACAGAGGTATTGGTATG
ACGAAGGAGGATTTAATCAAGAACTTGGGAACCATTGCAAAATCTGGAAC
ATCAGCATTTGTTGAGAAAATGCAGACTAGCGGTGACCTCAATCTTATTG
GGCAATTTGGTGTTGGCTTTTACTCTGTATATCTTGGTGCTGACTATGNT
GAAGTCATTTAGCAACATATGATGACAACAGTATGTATGGGAATCAAGGC
T
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