FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 2
Query:  281 KKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 565
            K+     ++HPVY GVR R WGKWVSEIREPRKKSRIWLG+F  PEMAA+A+DVAA  +KG  A LNFP+    LPRP++ +PRD+Q AAAKAA+
Sbjct:   33 KETSSSTTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEIEDLPRPSTCTPRDIQVAAAKAAN 127          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF24_ARATH (Ethylene-responsive transcription factor ERF024 OS=Arabidopsis thaliana GN=ERF024 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 61/88 (69.32%), Postives = 70/88 (79.55%), Query Frame = 2
Query:  305 KHPVYRGVRMRA-WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 565
            +HP+YRGVR R    KWVSEIREPRK +RIWLGTFSTPEMAA A+DVAAL++KG+ A LNFP    SLP P S SP D+QAAAA AA+
Sbjct:   11 RHPLYRGVRQRKNSNKWVSEIREPRKPNRIWLGTFSTPEMAAIAYDVAALALKGSQAELNFPNSVSSLPAPTSMSPADIQAAAASAAA 98          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.367e-25
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 562
            +++HP+YRGVR R  GKWVSE+REP KK+RIWLGTF T EMAARAHDVAAL+++G SA LNF   A  L  P S   +D+Q AAA+AA
Sbjct:   42 ETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAA 129          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.976e-25
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 2
Query:  272 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 562
            K+  ++   +++HP+YRGVR R  GKWV E+REP KKSRIWLGTF T EMAARAHDVAAL+++G SA LNF   A  L  P +  P+++Q AA++AA
Sbjct:   39 KRAGRKKFRETRHPIYRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSACLNFADSAWRLRIPETTCPKEIQKAASEAA 135          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.782e-25
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 562
            +++HP+YRGVR R  GKWV E+REP KK+RIWLGTF T EMAARAHDVAAL+++G SA LNF   A  L  P S   +D+Q AAA+AA
Sbjct:   45 ETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAA 132          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF27_ARATH (Ethylene-responsive transcription factor ERF027 OS=Arabidopsis thaliana GN=ERF027 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.511e-24
Identity = 56/89 (62.92%), Postives = 69/89 (77.53%), Query Frame = 2
Query:  305 KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            K PVYRG+R R+ GKWVSEIREPRK +RIWLGT+   EMAA A+DVAA+++KG  A+LNFP   GS P P S S  D++AAAA AA+M+
Sbjct:   15 KDPVYRGIRCRS-GKWVSEIREPRKTTRIWLGTYPMAEMAAAAYDVAAMALKGREAVLNFPGSVGSYPVPESTSAADIRAAAAAAAAMK 102          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF25_ARATH (Ethylene-responsive transcription factor ERF025 OS=Arabidopsis thaliana GN=ERF025 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.577e-24
Identity = 54/89 (60.67%), Postives = 70/89 (78.65%), Query Frame = 2
Query:  305 KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            KH ++RG+R+R  GKWVSEIREPRK +RIWLGT+  PEMAA A+DVAAL++KG  A+LNFP LA +   P S S  D++AAA++AA M+
Sbjct:   61 KHSIFRGIRLRN-GKWVSEIREPRKTTRIWLGTYPVPEMAAAAYDVAALALKGPDAVLNFPGLALTYVAPVSNSAADIRAAASRAAEMK 148          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.366e-24
Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAA 562
            +++HP+YRGVR R  GKWV E+REP KK+RIWLGTF T EMAARAHDVAA++++G SA LNF   A  L  P S   +++Q AAA+AA
Sbjct:   45 ETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAA 132          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF26_ARATH (Ethylene-responsive transcription factor ERF026 OS=Arabidopsis thaliana GN=ERF026 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.499e-24
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 2
Query:  305 KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 565
            K+PVYRG+R R+ GKWVSEIREP+K +R+WLGT+ TPEMAA A+DVAAL++KG   +LNFP   GS P P S S   ++ AAA AA+
Sbjct:   86 KNPVYRGIRCRS-GKWVSEIREPKKTTRVWLGTYPTPEMAAAAYDVAALALKGGDTLLNFPDSLGSYPIPLSSSAAHIRCAAAAAAA 171          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSJ (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. japonica GN=DREB1F PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.794e-24
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWG-KWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKG-ASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 568
            +++HPVYRGVR RA G +WV E+REP+ ++RIWLGT+ TPEMAARAHDVAA++++G   A LNFP    +LPR  + SP D++ AAA+AA +
Sbjct:   41 ETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAEL 132          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ERF23_ARATH7.003e-3064.21Ethylene-responsive transcription factor ERF023 OS... [more]
ERF24_ARATH3.253e-2769.32Ethylene-responsive transcription factor ERF024 OS... [more]
DRE1B_ARATH1.367e-2563.64Dehydration-responsive element-binding protein 1B ... [more]
DRE1D_ARATH3.976e-2556.70Dehydration-responsive element-binding protein 1D ... [more]
DRE1A_ARATH6.782e-2562.50Dehydration-responsive element-binding protein 1A ... [more]
ERF27_ARATH1.511e-2462.92Ethylene-responsive transcription factor ERF027 OS... [more]
ERF25_ARATH2.577e-2460.67Ethylene-responsive transcription factor ERF025 OS... [more]
DRE1C_ARATH3.366e-2460.23Dehydration-responsive element-binding protein 1C ... [more]
ERF26_ARATH7.499e-2460.92Ethylene-responsive transcription factor ERF026 OS... [more]
DRE1F_ORYSJ9.794e-2457.61Dehydration-responsive element-binding protein 1F ... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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