FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            +RGVR R WG++ +EIR+P KK+R+WLGTF T E AARA+D AA   +G+ A  NFP
Sbjct:   33 FRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG-------------SLPRPASKS----------PRDVQAAAAKAASMEI 574
            YRGVR R WGK+ +EIR+P K  +R+WLGT+ T E AA A+D AA  ++G+ A+LNFP   G               P PAS S           R  +A AAK A +E+
Sbjct:   99 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTAKRRSPEPASSSISSALENGSPKRRRKAVAAKKAELEV 208          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 46/110 (41.82%), Postives = 60/110 (54.55%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG-------------SLPRPASKS----------PRDVQAAAAKAASMEI 574
            YRGVR R WGK+ +EIR+P K  +R+WLGT+ T E AA A+D AA  ++G+ A+LNFP   G               P PAS S           R  +A AAK A +E+
Sbjct:  103 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTVKRRSPEPASSSISPASENSLPKRRRKAVAAKQAELEV 212          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1J_ORYSI (Dehydration-responsive element-binding protein 1J OS=Oryza sativa subsp. indica GN=DREB1J PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 47/97 (48.45%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAW-GKWVSEIREPRKKS-RIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL--PRPASKSPR----DVQAAAAKAAS 565
            +++HPV+RGVR R   G+WV E+R P  +  R+W+GTF T E AARAHD A L++ GASA LNF   A  L  PR    S      DVQ AA++A +
Sbjct:   45 ETRHPVFRGVRRRGRAGRWVCEVRVPGSRGDRLWVGTFDTAEEAARAHDAAMLAMCGASASLNFTDSAWLLHVPRAPVASGHDQLPDVQRAASEAVA 141          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEIFDN 583
            YRGVR R WGKW +EIR+P ++ RIWLGTF+T E AA  +D AA+ ++G  A+ NF       P P  +  ++ ++  + + S  + D+
Sbjct:  117 YRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF--TVQPEPEPVQEQEQEPESNMSVSISESMDDS 203          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            +RGVR R WGKW +EIR+P ++ R+WLGTF T E AA  +D AA+ ++G +A LNFP
Sbjct:   87 FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            YRGVR R WG++ +EIR+P KK+R+WLGTF TPE AA A+D AA  ++G  A  NFP
Sbjct:   12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 2
Query:  281 KKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKS-RIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            K    ++ +H  YRGVR R WGK+ +EIR+P KK  RIWLGT+ T   A RA+D AA  ++G  AILNFP
Sbjct:   78 KTEKEEEERH--YRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF20_ARATH (Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 2
Query:  296 DDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAI----LNFPKLAGSLPRPASKSPRDVQAAAAKA 559
            D SK   Y+G+R R WGKWVSEIR P  + R+WLG+FST E AA AHDVA   +   S++     NFP L  +    ++ SP+ +Q AA+ A
Sbjct:   10 DQSK---YKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCLHRPSSLDDESFNFPHLL-TTSLASNISPKSIQKAASDA 97          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 2
Query:  296 DDSKHPVYRGVRMRAWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            ++ +H  YRGVRMR WGK+ +EIR+P R+ +R+WLGTF T   AARA+D  A  ++G+ AILNFP
Sbjct:  132 EEKRH--YRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ERF80_ARATH1.567e-1357.89Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF2_TOBAC1.567e-1341.82Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY1.567e-1341.82Ethylene-responsive transcription factor 2 OS=Nico... [more]
DRE1J_ORYSI1.567e-1348.45Dehydration-responsive element-binding protein 1J ... [more]
CRF4_ARATH1.567e-1340.45Ethylene-responsive transcription factor CRF4 OS=A... [more]
CRF1_ARATH1.567e-1356.14Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF81_ARATH2.047e-1359.65Ethylene-responsive transcription factor 12 OS=Ara... [more]
EF104_ARATH2.047e-1352.86Ethylene-responsive transcription factor ERF104 OS... [more]
ERF20_ARATH2.673e-1346.74Ethylene-responsive transcription factor ERF020 OS... [more]
EF103_ARATH2.673e-1355.38Ethylene-responsive transcription factor 6 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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