FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.673e-13
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            YRGVR R WGKWV+EIREP   +R+WLGTFS+   AA A+D AA +I G SA LN P++
Sbjct:   72 YRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLPEI 130          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.491e-13
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  302 SKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            SK   +RGVR R WG++ +EIR+P KK+R+WLGTF + E AARA+D AA +++G  A  NFP
Sbjct:   23 SKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            + KH  YRGVR R WGK+ +EIR+P RK +R+WLGTF T   AA+A+D AA  ++G+ AI+NFP
Sbjct:  141 EKKH--YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFP 202          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            + KH  YRGVR R WGK+ +EIR+P RK +R+WLGTF T   AA+A+D AA  ++G+ AI+NFP
Sbjct:  134 EKKH--YRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFP 195          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1H_ORYSJ (Dehydration-responsive element-binding protein 1H OS=Oryza sativa subsp. japonica GN=DREB1H PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 2
Query:  272 KKQKKRPRD-----DSKHPVYRGVRMRAW-GKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIK-----GASAILNFPKLAGSLPRPASKSPRD---VQAAAAKAAS 565
            ++ KKRP       +++HPVYRGVR R   G+WV E+R P K+ +R+WLGT+ T E AARAHD A ++++     G +A LNF   A  L  P + +P D   V+ AA +A +
Sbjct:   27 QQYKKRPAGRTKFRETRHPVYRGVRRRGGAGRWVCEVRVPGKRGARLWLGTYVTAEAAARAHDAAMIALRGGAGGGGAACLNFQDSAWLLAVPPA-APSDLAGVRRAATEAVA 138          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1H_ORYSI (Dehydration-responsive element-binding protein 1H OS=Oryza sativa subsp. indica GN=DREB1H PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 2
Query:  272 KKQKKRPRD-----DSKHPVYRGVRMRAW-GKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIK-----GASAILNFPKLAGSLPRPASKSPRD---VQAAAAKAAS 565
            ++ KKRP       +++HPVYRGVR R   G+WV E+R P K+ +R+WLGT+ T E AARAHD A ++++     G +A LNF   A  L  P + +P D   V+ AA +A +
Sbjct:   27 QQYKKRPAGRTKFRETRHPVYRGVRRRGGAGRWVCEVRVPGKRGARLWLGTYVTAEAAARAHDAAMIALRGGAGGGGAACLNFQDSAWLLAVPPA-APSDLAGVRRAATEAVA 138          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  272 KKQKKRPRDDS----KHPVYRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            KK+K  P   +    K   YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D AA  ++G+ A+LNFP
Sbjct:  129 KKEKTSPVSAAVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 205          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            +RGVR R WGKW +EIR+P ++ RIWLGTF T E AA  +D AA+ ++G  A+ NF
Sbjct:  125 FRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            +RGVR R WGKW +EIR+P K+ R+WLGT++T E AA  +D AA+ ++G  A+ NF
Sbjct:  122 FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKS-RIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            YRGVR R WGK+ +EIR+  +K  R+WLGTF T E AA A+D AA ++KG+ A+LNFP
Sbjct:   82 YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
DRE2C_ARATH2.673e-1361.02Dehydration-responsive element-binding protein 2C ... [more]
ERF3_TOBAC3.491e-1354.84Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF5_TOBAC4.560e-1356.25Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY5.956e-1356.25Ethylene-responsive transcription factor 5 OS=Nico... [more]
DRE1H_ORYSJ5.956e-1342.48Dehydration-responsive element-binding protein 1H ... [more]
DRE1H_ORYSI5.956e-1342.48Dehydration-responsive element-binding protein 1H ... [more]
EF100_ARATH1.016e-1250.65Ethylene-responsive transcription factor 1A OS=Ara... [more]
CRF3_ARATH1.016e-1255.36Ethylene-responsive transcription factor CRF3 OS=A... [more]
CRF2_ARATH1.016e-1253.57Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF94_ARATH1.327e-1258.62Ethylene-responsive transcription factor ERF094 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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