FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            YRGVR R WGK+ +EIR+P K  +R+WLGT+ T E AA A+D AA  ++G+ A LNFP   G         P  V+  A + AS E
Sbjct:  105 YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIG------LNEPEPVRVTAKRRASPE 184          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            YRGVR R WGK+ +EIR+P  ++RIWLGTF T E AA A+D AA+ +KG  A+ NF
Sbjct:  105 YRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            YRGVR R WGK+ +EIR+  R  +R+WLGTF+T E AARA+D AA  ++G  AILNFP
Sbjct:   14 YRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFP 71          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            Y GVR R WGKWV+EIREP + +++WLGTFS+   AA A+D A+ +I G SA LN P L
Sbjct:   67 YTGVRQRTWGKWVAEIREPGRGAKLWLGTFSSSYEAALAYDEASKAIYGQSARLNLPLL 125          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1A_ORYSJ (Dehydration-responsive element-binding protein 1A OS=Oryza sativa subsp. japonica GN=DREB1A PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRA-WGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIK------GASAILNFPKLAGSLPRPAS-KSPRDVQAAAAKA 559
            +++HPV+RGVR R   G+WV E+R P R+  R+WLGTF T E AARAHD A L+I       G +  LNF   A  L  P S ++  DV+ A A+A
Sbjct:   45 ETRHPVFRGVRRRGNAGRWVCEVRVPGRRGCRLWLGTFDTAEGAARAHDAAMLAINAGGGGGGGACCLNFADSAWLLAVPRSYRTLADVRHAVAEA 140          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1A_ORYSI (Dehydration-responsive element-binding protein 1A OS=Oryza sativa subsp. indica GN=DREB1A PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 45/96 (46.88%), Postives = 59/96 (61.46%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRA-WGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIK------GASAILNFPKLAGSLPRPAS-KSPRDVQAAAAKA 559
            +++HPV+RGVR R   G+WV E+R P R+  R+WLGTF T E AARAHD A L+I       G +  LNF   A  L  P S ++  DV+ A A+A
Sbjct:   45 ETRHPVFRGVRRRGNAGRWVCEVRVPGRRGCRLWLGTFDTAEGAARAHDAAMLAINAGGGGGGGACCLNFADSAWLLAVPRSYRTLADVRHAVAEA 140          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  290 PRDDSKHPV------YRGVRMRAWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            PR++   P+      YRGVR R WGK+ +EIR+  R  +R+WLGTF T E AA A+D AA  ++GA A+LNFP
Sbjct:   44 PRNNILRPLQCIGKKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFP 116          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSJ (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. japonica GN=DREB2A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            ++ +  YRGVR R WGKWV+EIREP +  R+WLG+F T   AA A+D AA ++ G +A +NF
Sbjct:   70 ENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE2A_ORYSI (Dehydration-responsive element-binding protein 2A OS=Oryza sativa subsp. indica GN=DREB2A PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            ++ +  YRGVR R WGKWV+EIREP +  R+WLG+F T   AA A+D AA ++ G +A +NF
Sbjct:   70 ENSNCAYRGVRQRTWGKWVAEIREPNRGRRLWLGSFPTALEAAHAYDEAARAMYGPTARVNF 131          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            YRGVR R WGK+ +EIR+P  ++R+WLGTF+T E AA  +D AA+ IKG +A  NF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ERF1_TOBAC1.327e-1246.51Ethylene-responsive transcription factor 1 OS=Nico... [more]
CRF6_ARATH1.327e-1258.93Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF95_ARATH2.263e-1260.34Ethylene-responsive transcription factor ERF095 OS... [more]
DRE2H_ARATH2.263e-1257.63Putative dehydration-responsive element-binding pr... [more]
DRE1A_ORYSJ2.263e-1246.88Dehydration-responsive element-binding protein 1A ... [more]
DRE1A_ORYSI2.263e-1246.88Dehydration-responsive element-binding protein 1A ... [more]
PTI5_SOLLC5.042e-1250.68Pathogenesis-related genes transcriptional activat... [more]
DRE2A_ORYSJ5.042e-1251.61Dehydration-responsive element-binding protein 2A ... [more]
DRE2A_ORYSI5.042e-1251.61Dehydration-responsive element-binding protein 2A ... [more]
CRF5_ARATH6.585e-1257.14Ethylene-responsive transcription factor CRF5 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
back to top