FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE2G_ARATH (Dehydration-responsive element-binding protein 2G OS=Arabidopsis thaliana GN=DREB2G PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILN 481
            +RGVR R WGKWV+EIREP + +R+WLGTF+T   AA A+D AA  + G  A LN
Sbjct:   34 FRGVRQRTWGKWVAEIREPNRGTRLWLGTFNTSVEAAMAYDEAAKKLYGHEAKLN 88          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF88_ARATH (Ethylene-responsive transcription factor ERF088 OS=Arabidopsis thaliana GN=ERF088 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 35/73 (47.95%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  266 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            ++ K+K +     +   Y GVR R WG++ +EIR P  K R WLGTF T E AA A+DVAA SI G+ A  NF
Sbjct:    4 SSNKRKSKEEKKLQEGKYLGVRRRPWGRYAAEIRNPFTKERHWLGTFDTAEEAAFAYDVAARSISGSLATTNF 76          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE2E_ARATH (Dehydration-responsive element-binding protein 2E OS=Arabidopsis thaliana GN=DREB2E PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.467e-11
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  269 AKKQKKRPRDDSKHPV--YRGVRMRAWGKWVSEIREP--------RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG 499
            +KK   R +   ++PV  +RGVR R WGKWV+EIREP         +  R+WLGTF+T   AA A+D AA  + G  A LNFP+  G
Sbjct:   52 SKKGCMRGKGGPENPVCRFRGVRQRVWGKWVAEIREPVSHRGANSSRSKRLWLGTFATAAEAALAYDRAASVMYGPYARLNFPEDLG 138          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.916e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            YRGVR R WG++ +EIR+P  K R WLGTF T E AA A+D AA + +GA A  NF
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.502e-11
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKS-RIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            YRGVR R WGK+ +EIR+  +   R+WLGTF + E AA A+D AA S++G+SAILNF
Sbjct:   82 YRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNF 138          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.502e-11
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG 499
            YRGVR R WGK+ +EIR+P K  +R+WLGT+ + E AA A+  AA  ++G  A+LNFP   G
Sbjct:  107 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIG 168          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF87_ARATH (Ethylene-responsive transcription factor ERF087 OS=Arabidopsis thaliana GN=ERF087 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.268e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  272 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPAS 520
            ++ + +P+   +   Y GVR R WG++ +EIR P  K R WLGTF T E AA A+D AA SI+G +A  NF  +   +PR +S
Sbjct:   24 QQPQPQPQQHIEEIKYVGVRRRPWGRYAAEIRNPTTKERYWLGTFDTAEEAALAYDRAARSIRGLTARTNF--VYSDMPRGSS 104          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: LEP_ARATH (Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.268e-11
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  278 QKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            + K+ +DD     + GVR R WG++ +EIR+P  K R WLGTF T E AA A+D AA S++G  A  NF
Sbjct:    7 KSKKKQDDQVGTRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAEEAALAYDRAARSMRGTRARTNF 75          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query:  275 KQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            KQK + +       + GVR R  GKWV+EI++  +K R+WLGTF T E AARA+D AA  ++G++   NF
Sbjct:    8 KQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNF 77          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.508e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF 484
            YRGVR R WG++ +EIR+P  K R WLGTF T E AA A+D AA +++G  A  NF
Sbjct:   58 YRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
DRE2G_ARATH8.600e-1258.18Dehydration-responsive element-binding protein 2G ... [more]
ERF88_ARATH1.467e-1147.95Ethylene-responsive transcription factor ERF088 OS... [more]
DRE2E_ARATH1.467e-1145.98Dehydration-responsive element-binding protein 2E ... [more]
ESR1_ARATH1.916e-1157.14Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF92_ARATH2.502e-1157.89Ethylene-responsive transcription factor 1B OS=Ara... [more]
ERF1_SOLLC2.502e-1151.61Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF87_ARATH3.268e-1143.37Ethylene-responsive transcription factor ERF087 OS... [more]
LEP_ARATH4.268e-1147.83Ethylene-responsive transcription factor LEP OS=Ar... [more]
RA211_ARATH7.280e-1145.71Ethylene-responsive transcription factor RAP2-11 O... [more]
ESR2_ARATH9.508e-1155.36Ethylene-responsive transcription factor ESR2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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