FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1F_ORYSI (Dehydration-responsive element-binding protein 1F OS=Oryza sativa subsp. indica GN=DREB1F PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.794e-24
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWG-KWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKG-ASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 568
            +++HPVYRGVR RA G +WV E+REP+ ++RIWLGT+ TPEMAARAHDVAA++++G   A LNFP    +LPR  + SP D++ AAA+AA +
Sbjct:   41 ETRHPVYRGVRARAGGSRWVCEVREPQAQARIWLGTYPTPEMAARAHDVAAIALRGERGAELNFPDSPSTLPRARTASPEDIRLAAAQAAEL 132          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.279e-23
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 568
            YRG+R R WGKWVSEIREP KK+RIWLG++ T EMAA A+D AAL ++G    LNFP+L  S PRP S S   +QAAA  AA M
Sbjct:   20 YRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPELVDSFPRPESSSSEHIQAAAQDAALM 103          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.182e-23
Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKA 559
            YRGVR R WGKWVSEIREP  K+RIWLG+F TPEMAA A+DVAA   +G  A LNFP+LA SLPRPA  S   ++ A  +A
Sbjct:   24 YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELASSLPRPADSSSDSIRMAVHEA 104          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1E_ARATH (Dehydration-responsive element-binding protein 1E OS=Arabidopsis thaliana GN=DREB1E PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.414e-22
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  272 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 568
            K+  +R   +++HP+YRGVR R   KWV E+REP  + R+WLGT+ T +MAARAHDVA L+++G SA LNF   A  LP PAS  P  ++  AA+AA M
Sbjct:   15 KRAGRRIFKETRHPIYRGVRRRDGDKWVCEVREPIHQRRVWLGTYPTADMAARAHDVAVLALRGRSACLNFSDSAWRLPVPASTDPDTIRRTAAEAAEM 113          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1F_ARATH (Dehydration-responsive element-binding protein 1F OS=Arabidopsis thaliana GN=DREB1F PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.412e-22
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  272 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 568
            K+  +R   +++HPVYRG+R R   KWV E+REP  + RIWLGT+ T +MAARAHDVA L+++G SA LNF   A  LP P S  P  ++  AA+AA M
Sbjct:   15 KRAGRRVFKETRHPVYRGIRRRNGDKWVCEVREPTHQRRIWLGTYPTADMAARAHDVAVLALRGRSACLNFADSAWRLPVPESNDPDVIRRVAAEAAEM 113          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 51/101 (50.50%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  284 KRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGS-------LPRPASKSPRDVQAAAAKAAS 565
            K     SK   Y+GVRMR+WG WVSEIR P +K+RIWLG++ST E AARA+DVA L +KG  A LNFP  + S       L      SP+ +Q  AA+AA+
Sbjct:   39 KNKNKKSKIKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFPTSSSSHHLLDNLLDENTLLSPKSIQRVAAQAAN 139          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1G_ORYSJ (Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. japonica GN=DREB1G PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPASKSPRDVQAAAAKAA 562
            +++HPV++GVR R  G+WV E+REP  K RIWLGTF T EMAARAHDVAAL+++G +A LNF      L   P   S  D++ AAA+AA
Sbjct:   49 ETRHPVFKGVRRRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAALALRGRAACLNFADSPRRLRVPPIGASHDDIRRAAAEAA 137          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1G_ORYSI (Dehydration-responsive element-binding protein 1G OS=Oryza sativa subsp. indica GN=DREB1G PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.121e-19
Identity = 49/89 (55.06%), Postives = 63/89 (70.79%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPASKSPRDVQAAAAKAA 562
            +++HPV++GVR R  G+WV E+REP  K RIWLGTF T EMAARAHDVAAL+++G +A LNF      L   P   S  D++ AAA+AA
Sbjct:   49 ETRHPVFKGVRRRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAALALRGRAACLNFADSPRRLRVPPIGASHDDIRRAAAEAA 137          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1C_ORYSJ (Dehydration-responsive element-binding protein 1C OS=Oryza sativa subsp. japonica GN=DREB1C PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.496e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRA-WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPAS-KSPRDVQAAAAKAA 562
            +++HPVYRGVR R   G+WV E+REP KKSRIWLGTF+T E AARAHDVAAL+++G  A LNF   A  L   PA+  +P D++ AA + A
Sbjct:   28 ETRHPVYRGVRRRGPAGRWVCEVREPNKKSRIWLGTFATAEAAARAHDVAALALRGRGACLNFADSARLLRVDPATLATPDDIRRAAIELA 118          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1C_ORYSI (Dehydration-responsive element-binding protein 1C OS=Oryza sativa subsp. indica GN=DREB1C PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.496e-19
Identity = 52/91 (57.14%), Postives = 66/91 (72.53%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRA-WGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPAS-KSPRDVQAAAAKAA 562
            +++HPVYRGVR R   G+WV E+REP KKSRIWLGTF+T E AARAHDVAAL+++G  A LNF   A  L   PA+  +P D++ AA + A
Sbjct:   28 ETRHPVYRGVRRRGPAGRWVCEVREPNKKSRIWLGTFATAEAAARAHDVAALALRGRGACLNFADSARLLRVDPATLATPDDIRRAAIELA 118          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
DRE1F_ORYSI9.794e-2457.61Dehydration-responsive element-binding protein 1F ... [more]
ERF22_ARATH1.279e-2361.90Ethylene-responsive transcription factor ERF022 OS... [more]
ERF21_ARATH2.182e-2364.20Ethylene-responsive transcription factor ERF021 OS... [more]
DRE1E_ARATH1.414e-2251.52Dehydration-responsive element-binding protein 1E ... [more]
DRE1F_ARATH2.412e-2251.52Dehydration-responsive element-binding protein 1F ... [more]
ERF12_ARATH1.121e-1950.50Ethylene-responsive transcription factor ERF012 OS... [more]
DRE1G_ORYSJ1.121e-1955.06Dehydration-responsive element-binding protein 1G ... [more]
DRE1G_ORYSI1.121e-1955.06Dehydration-responsive element-binding protein 1G ... [more]
DRE1C_ORYSJ2.496e-1957.14Dehydration-responsive element-binding protein 1C ... [more]
DRE1C_ORYSI2.496e-1957.14Dehydration-responsive element-binding protein 1C ... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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