FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.260e-19
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  269 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 565
            A K++++ R+ +    Y+GVR R WGKWVSEIR P  + RIWLG++ TPE AARA D A   ++G  A  NFP    S+    S +P ++Q AAA+ A+
Sbjct:    5 AMKEEEKKRNTAMQSKYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQEAAARFAN 103          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.258e-19
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 2
Query:  266 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASMEI 574
            A K +++RP        ++G+RMR WGKWV+EIREP K+SR+WLG++STPE AARA+D A   ++G +A LNFP+L   LP     S  D+ AA  +  + E+
Sbjct:   12 AVKMKRERP--------FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPEL---LP---CTSAEDMSAATIRKKATEV 100          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASK-SPRDVQAAAAKAASMEI 574
            Y+G+RMR WGKWV+EIREP K+SR+WLG++STPE AARA+D A   ++G +A LNFP+L      P  K S  D+ AA  +  + E+
Sbjct:   21 YKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELL-----PGEKFSDEDMSAATIRKKATEV 102          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1E_ORYSJ (Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. japonica GN=DREB1E PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPASKSPRDVQAAAAKAASM 568
            +++HPVY+GVR R  G+WV E+REP  K RIWLGTF T EMAARAHDVAA++++G +A LNF      L   P      +++ AA +AA +
Sbjct:   47 ETRHPVYKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAAMALRGRAACLNFADSPRRLRVPPLGAGHEEIRRAAVEAAEL 137          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1E_ORYSI (Dehydration-responsive element-binding protein 1E OS=Oryza sativa subsp. indica GN=DREB1E PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL-PRPASKSPRDVQAAAAKAASM 568
            +++HPVY+GVR R  G+WV E+REP  K RIWLGTF T EMAARAHDVAA++++G +A LNF      L   P      +++ AA +AA +
Sbjct:   47 ETRHPVYKGVRSRNPGRWVCEVREPHGKQRIWLGTFETAEMAARAHDVAAMALRGRAACLNFADSPRRLRVPPLGAGHEEIRRAAVEAAEL 137          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.239e-18
Identity = 40/59 (67.80%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            Y+G+RMR WGKWV+EIREP K+SRIWLG++STPE AARA+D A   ++G SA LNFP+L
Sbjct:   30 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPEL 88          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF13_ARATH (Ethylene-responsive transcription factor ERF013 OS=Arabidopsis thaliana GN=ERF013 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.239e-18
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLP------RPASKSPRDVQAAAAKAAS 565
            Y+GVRMR+WG WV+EIR P +K+RIWLG++ST E AARA+D A L +KG  A LNFP +  + P           SP+ +Q  AA+AA+
Sbjct:   43 YKGVRMRSWGSWVTEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGPKANLNFPNITTTSPFLMNIDEKTLLSPKSIQKVAAQAAN 131          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.239e-18
Identity = 40/63 (63.49%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL 505
            Y+G+RMR WGKWV+EIREP K+SRIWLG+++TPE AARA+D A   ++G SA LNFP+L   L
Sbjct:   28 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLAGL 90          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF14_ARATH (Ethylene-responsive transcription factor ERF014 OS=Arabidopsis thaliana GN=ERF014 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASA-ILNFPKLAGSL-------PRPASKSPRDVQAAAAKAAS 565
            Y+GVRMR+WG WVSEIR P +K+RIWLG++ST E AARA+D A L +KG+SA  LNFP+++ SL             SP+ +Q  AA AA+
Sbjct:   35 YKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANNLNFPEISTSLYHIINNGDNNNDMSPKSIQRVAAAAAA 125          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ABI4_ARATH (Ethylene-responsive transcription factor ABI4 OS=Arabidopsis thaliana GN=ABI4 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.605e-18
Identity = 50/100 (50.00%), Postives = 66/100 (66.00%), Query Frame = 2
Query:  266 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 565
            A +K+K +   D+    YRGVR R+WGKWV+EIREPRK++R WLGTF+T E AARA+D AA+ + G+ A LN   L  S P   S S   V AA++ + S
Sbjct:   38 AQRKRKGKGGPDNSKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAVYLYGSRAQLN---LTPSSPSSVSSSSSSVSAASSPSTS 134          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ERF18_ARATH3.260e-1945.45Ethylene-responsive transcription factor ERF018 OS... [more]
ERF11_ARATH4.258e-1946.60Ethylene-responsive transcription factor ERF011 OS... [more]
ERF10_ARATH5.561e-1951.72Ethylene-responsive transcription factor ERF010 OS... [more]
DRE1E_ORYSJ5.561e-1950.55Dehydration-responsive element-binding protein 1E ... [more]
DRE1E_ORYSI5.561e-1950.55Dehydration-responsive element-binding protein 1E ... [more]
RA210_ARATH1.239e-1867.80Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF13_ARATH1.239e-1850.56Ethylene-responsive transcription factor ERF013 OS... [more]
ERF08_ARATH1.239e-1863.49Ethylene-responsive transcription factor ERF008 OS... [more]
ERF14_ARATH2.760e-1852.75Ethylene-responsive transcription factor ERF014 OS... [more]
ABI4_ARATH3.605e-1850.00Ethylene-responsive transcription factor ABI4 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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