FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.149e-18
Identity = 50/100 (50.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  266 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLP---RPASKSPRDVQAAAAK 556
            A +  K+R R +    VYRG+R R WGKW +EIR+PRK  R+WLGTF+T E AA A+DVAA  I+G  A LNFP L    P    P   SPR      AK
Sbjct:   66 ATEPGKRRKRKN----VYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAK 161          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  269 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG----SLPRPASKSPRDVQAAAAK 556
            A+K  KR R +     YRG+R R WGKW +EIR+PRK SR WLGTF T E AARA+D AA  I+G  A +NFP+       S  RP++K+  ++Q + AK
Sbjct:  116 AEKSSKRKRKNQ----YRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKT-NNLQKSVAK 210          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.052e-17
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPAS--KSPRDVQAAAAK 556
            YRGVR R WGKW +EIR+P + +R+WLGTF T E AARA+D AAL  +G  A LNFP+    LP P    +SP D  A  A+
Sbjct:   77 YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPPPPPLLRSPADTVANKAE 158          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGS 502
            YRGVR R WGKW +EIR+P K +R+WLGTF T E AARA+D AAL  +G+ A LNFP+  G+
Sbjct:   61 YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVGT 122          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF15_ARATH (Ethylene-responsive transcription factor ERF015 OS=Arabidopsis thaliana GN=ERF015 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 47/99 (47.47%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  284 KRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNF-----PKLAGSLPRPASKSPRDVQAAAAKAAS 565
            K   +D K   YRGVR R+WGKWVSEIR P+   RIWLG++  PE AARA+D A   I+G   + NF     P+L     RP SK   D+Q  A   AS
Sbjct:   16 KGAHEDRKFKCYRGVRKRSWGKWVSEIRVPKTGRRIWLGSYDAPEKAARAYDAALFCIRGEKGVYNFPTDKKPQLPEGSVRPLSK--LDIQTIATNYAS 112          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 44/80 (55.00%), Postives = 53/80 (66.25%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAK 556
            YRGVR R WGKW +EIR+P K +R+WLGTF   E AARA+D AAL  +G  A LNFP+    L RPAS   + V   AA+
Sbjct:  185 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENV-KLVRPASTEAQPVHQTAAQ 263          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 40/79 (50.63%), Postives = 58/79 (73.42%), Query Frame = 2
Query:  272 KKQKKRPRDDSKHPV-----YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            +K+++ P+++  + V     YRG+R R WGKWV+EIREP K+SR+WLG+++T   AARA+DVA   ++G SA LNFP L
Sbjct:   11 RKRRQPPQEEVPNHVATRKPYRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPDL 89          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  275 KQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPK 490
            ++ KR    S    Y+G+RMR WGKWV+EIREP K+SRIWLG++ T   AARA+D A   ++G SA LNFP+
Sbjct:   22 EKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPE 93          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.978e-16
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASM 568
            YRGVR R WGKWV+EIREP+K++R+WLG+F+T E AA A+D AAL + G  A LN P L  +     S S R     + K  SM
Sbjct:   28 YRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDAYLNLPHLQRNTRPSLSNSQRFKWVPSRKFISM 111          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  278 QKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPK 490
            Q +  +D  +   YRGVR R WGKW +EIR+P+K +R+WLGTF T E AA A+D AAL  KG  A LNFP+
Sbjct:   26 QHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPE 96          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
RAP23_ARATH6.149e-1850.00Ethylene-responsive transcription factor RAP2-3 OS... [more]
RAP22_ARATH2.337e-1749.00Ethylene-responsive transcription factor RAP2-2 OS... [more]
EF110_ARATH3.052e-1753.66Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH6.798e-1761.29Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF15_ARATH6.798e-1747.47Ethylene-responsive transcription factor ERF015 OS... [more]
ABR1_ARATH6.798e-1755.00Ethylene-responsive transcription factor ABR1 OS=A... [more]
RAP21_ARATH1.160e-1650.63Ethylene-responsive transcription factor RAP2-1 OS... [more]
RAP29_ARATH1.978e-1654.17Ethylene-responsive transcription factor RAP2-9 OS... [more]
DRE2F_ARATH1.978e-1651.19Dehydration-responsive element-binding protein 2F ... [more]
EF113_ARATH2.583e-1654.93Ethylene-responsive transcription factor ERF113 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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