FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1B_ORYSJ (Dehydration-responsive element-binding protein 1B OS=Oryza sativa subsp. japonica GN=DREB1B PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  299 DSKHPVYRGVRMR-----AWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPR-PAS------KSPRDVQAAAAKA 559
            +++HPVYRGVR R     A G+WV E+R P  + SR+WLGTF+T E AARAHD AAL+++G +A LNF   A  +P  PAS      +  RD  A A +A
Sbjct:   27 ETRHPVYRGVRRRGGRPGAAGRWVCEVRVPGARGSRLWLGTFATAEAAARAHDAAALALRGRAACLNFADSAWRMPPVPASAALAGARGVRDAVAVAVEA 126          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1B_ORYSI (Dehydration-responsive element-binding protein 1B OS=Oryza sativa subsp. indica GN=DREB1B PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.282e-15
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:  299 DSKHPVYRGVRMR-----AWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPR-PAS------KSPRDVQAAAAKA 559
            +++HPVYRGVR R     A G+WV E+R P  + SR+WLGTF+T E AARAHD AAL+++G +A LNF   A  +P  PAS      +  RD  A A +A
Sbjct:   27 ETRHPVYRGVRRRGGRPGAAGRWVCEVRVPGARGSRLWLGTFATAEAAARAHDAAALALRGRAACLNFADSAWRMPPVPASAALAGARGVRDAVAVAVEA 126          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  302 SKHPVYRGVRMRAWGKWVSEIREPRKKS-RIWLGTFSTPEMAARAHDVAALSIKGASAILNFP---KLAGSLPRPASKSPRDVQAAAAKAASMEIFD 580
            ++H  YRGVR R WGK+ +EIR+ RK   R+WLGTF T E AARA+D AA S++G +AILNFP    +   +    + +     +A+A ++S ++F+
Sbjct:   10 AEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHEYNMGSGVSSSTAMAGSSSASASASSSSRQVFE 106          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  314 VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            +YRGVR R WGKWV+EIR+PR ++R+WLGTF T E AA A+D  A  ++G +A LNFP+L
Sbjct:  186 LYRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPEL 245          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  269 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAASME 571
            A K  KR R +     +RG+R R WGKW +EIR+PRK  R+WLGTF++ E AARA+D  A  I+G  A +NFP+     P  A K       A A  +S+E
Sbjct:  108 AAKSAKRKRKNQ----FRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPE----APTTAQKRRAGSTTAKAPKSSVE 200          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.674e-15
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 2
Query:  272 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPAS 520
            K ++     D++H  YRGVR R WGK+ +EIR+P KK SRIWLGTF +   AARA+D AA  ++G  A+LNFP  AG    PA+
Sbjct:   97 KAERFEEEVDARH--YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPAN 178          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            YRGVR R WG++ +EIR+P KKSR+WLGTF TPE AARA+D  A+  +GA A  NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 2
Query:  293 RDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSP 529
            + +S+   YRGVR R WGKW +EIR+P K +R+WLGTF T E AA A+D AA   +G  A LNFP+     P     SP
Sbjct:   62 KSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVNPTQLYPSP 140          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.730e-15
Identity = 41/85 (48.24%), Postives = 58/85 (68.24%), Query Frame = 2
Query:  269 AKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPAS 520
            + ++K +  ++++H  YRGVR R WGK+ +EIR+P KK SRIWLGTF +   AARA+D AA  ++G  A+LNFP  AG    P +
Sbjct:   93 SNRKKTKRFEETRH--YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVN 175          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 565
            Y+GVR R WGKWVSEIR P  + RIWLG++ TPE AARA D A   ++G +A  NFP     +    + S  +++ AAA+ A+
Sbjct:   12 YKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIREAAARFAN 94          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
DRE1B_ORYSJ1.282e-1549.00Dehydration-responsive element-binding protein 1B ... [more]
DRE1B_ORYSI1.282e-1549.00Dehydration-responsive element-binding protein 1B ... [more]
ERF96_ARATH1.674e-1543.30Ethylene-responsive transcription factor ERF096 OS... [more]
ERF53_ARATH1.674e-1560.00Ethylene-responsive transcription factor ERF053 OS... [more]
ERF1_ORYSJ1.674e-1544.55Ethylene-responsive transcription factor 1 OS=Oryz... [more]
EF106_ARATH1.674e-1551.19Ethylene-responsive transcription factor ERF106 OS... [more]
ERF76_ARATH3.730e-1563.16Ethylene-responsive transcription factor 11 OS=Ara... [more]
EF112_ARATH3.730e-1549.37Ethylene-responsive transcription factor ERF112 OS... [more]
EF107_ARATH3.730e-1548.24Ethylene-responsive transcription factor ERF107 OS... [more]
ERF17_ARATH4.872e-1546.99Ethylene-responsive transcription factor ERF017 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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