FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: RAP24_ARATH (Ethylene-responsive transcription factor RAP2-4 OS=Arabidopsis thaliana GN=RAP2-4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  314 VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            +YRGVR R WGKWV+EIR PR ++R+WLGTF T E AA A+D AA  ++G  A LNFP L
Sbjct:  151 LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNL 210          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQ 541
            Y+G+R R WG+W +EIR+P K  R+WLGTF+T E AARA+D+ A  I+GA A LNFP  +    +  +K+ + V+
Sbjct:   25 YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVE 99          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.363e-15
Identity = 37/68 (54.41%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  290 PRDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            P       +YRGVR R WGKWV+EIR P+ ++R+WLGTF T E AA A+D AA  ++G  A LNFP L
Sbjct:   62 PSTSKTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNL 129          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLP------RPASKSP 529
            YRGVR R WGK+ +EIR+P+K  +R+WLGT+ TPE AA A+D AA  ++G+ A LNFP L GS        RP  +SP
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSP 169          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 2
Query:  314 VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPK 490
            +YRGVR R WGKWV+EIR P+ ++R+WLGTF T E AA A+D+AA  ++G  A LNFP+
Sbjct:   92 LYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQ 150          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  314 VYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            +YRGVR R WGKWV+EIR PR ++R+WLGTF T E AA A+D AA  ++G  A LNFP L
Sbjct:   82 LYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDL 141          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPAS 520
            D+    Y+GVR R WGKWV+EIREP + +R+WLGTF T   AA A+D AA  + G  A LN P+   S P+ AS
Sbjct:   36 DNASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPESLRSYPKTAS 109          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPAS 520
            YRGVR R WG++ +EIR+P KK+R+WLGTF T + AARA+D AA   +G  A  NF  + GS P  +S
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSSPTQSS 98          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  269 AKKQKKRPRDDSKHPV--YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            AK    +  D +  PV  YRGVR R WGKWV+EIR P+ ++R+WLGTF T + AA A+D AA  I+G +A LNFP +
Sbjct:   93 AKPTSMKKIDVATKPVKLYRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDI 169          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  272 KKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG 499
            K +  +P  + +   YRGVR R WGK+ +EIR+P K+ SR+WLGTF T   AARA+D AA  ++G+ AILNFP   G
Sbjct:  141 KPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVG 217          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
RAP24_ARATH6.363e-1561.67Ethylene-responsive transcription factor RAP2-4 OS... [more]
ERF73_ARATH6.363e-1548.00Ethylene-responsive transcription factor ERF073 OS... [more]
ERF56_ARATH6.363e-1554.41Ethylene-responsive transcription factor ERF056 OS... [more]
ERF99_ARATH8.310e-1552.56Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF60_ARATH8.310e-1559.32Ethylene-responsive transcription factor ERF060 OS... [more]
ERF58_ARATH8.310e-1561.67Ethylene-responsive transcription factor ERF058 OS... [more]
DRE2D_ARATH8.310e-1551.35Dehydration-responsive element-binding protein 2D ... [more]
ERF79_ARATH1.085e-1452.94Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF57_ARATH1.085e-1451.95Ethylene-responsive transcription factor ERF057 OS... [more]
EF102_ARATH1.085e-1450.65Ethylene-responsive transcription factor 5 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
back to top