FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  296 DDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            +++K   YRGVR R WG++ +EIR+P KK+R+WLGTF T E AARA+D AA   +GA A  NFP
Sbjct:   18 NNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 37/67 (55.22%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  293 RDDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKL 493
            R   K  +YRGVR R WGKWV+EIR P+ + R+WLGT+ T E AA A+D AA  ++G  A LNFP L
Sbjct:  128 RVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNL 194          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.851e-14
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 2
Query:  296 DDSKHPVYRGVRMRAWGKWVSEIREPRKKS-RIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAG 499
            +D +H  YRGVR R WGK+ +EIR+P KK  R+WLGTF T   AAR +D AA  ++G+ AILNFP  AG
Sbjct:   67 NDQRH--YRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAG 133          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.418e-14
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 2
Query:  272 KKQKKRPRDD-SKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            K++   P  D ++   +RGVR R WG+W +EIR+P +  R+WLGT+ TPE AA  +D AA+ +KG  A+ NFP
Sbjct:   82 KRRSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFP 154          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 35/64 (54.69%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  296 DDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            + SK   YRGVR R WG++ +EIR+P KK R+WLG+F+T E AARA+D AA+  +G+ A  NFP
Sbjct:   46 EKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASK 523
            +RGVR R WG WVSEIR P  K+RIWLGTF T E AARA+D AA  + G  A  NFP    ++P  +SK
Sbjct:    8 FRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNAIPTSSSK 76          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 565
            +RGVR R WG WV+EIR P  K RIWLGTF T E AARA+D AA+ + G +A  NFP L  +     S+   D+ A++  ++S
Sbjct:    7 FRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAKTNFP-LNNNNTGETSEGKTDISASSTMSSS 88          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            +RGVR R WG WVSEIR P  K R+WLGTF T E AARA+D AA+ + G SA  NFP
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFP 63          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            +RGVR R WG WVSEIR P  K R+WLGTF T E AARA+D AAL + G +A  NFP
Sbjct:    7 FRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFP 63          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  266 AAKKQKKRPRDDSKHPVYRGVRMRAWGKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRPASKSPRDVQAAAAKAAS 565
            ++ +       D K   +RGVR R WGK+ +EIR+P R  +R+WLGTF T E AARA+D AA +++G  AILNFP      PR    S R   A+++ ++S
Sbjct:    3 SSNRSSNNQSQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPN--EYYPRMDDYSLRPPYASSSSSSS 101          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ERF78_ARATH1.418e-1456.25Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF61_ARATH1.418e-1455.22Ethylene-responsive transcription factor ERF061 OS... [more]
EF105_ARATH1.851e-1456.52Ethylene-responsive transcription factor ERF105 OS... [more]
PTI6_SOLLC2.418e-1446.58Pathogenesis-related genes transcriptional activat... [more]
ERF77_ARATH3.158e-1454.69Ethylene-responsive transcription factor 10 OS=Ara... [more]
ERF03_ARATH3.158e-1456.52Ethylene-responsive transcription factor ERF003 OS... [more]
WIN1_ARATH4.124e-1448.19Ethylene-responsive transcription factor WIN1 OS=A... [more]
SHN3_ARATH4.124e-1463.16Ethylene-responsive transcription factor SHINE 3 O... [more]
SHN2_ARATH4.124e-1463.16Ethylene-responsive transcription factor SHINE 2 O... [more]
ERF98_ARATH4.124e-1442.57Ethylene-responsive transcription factor ERF098 OS... [more]

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Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
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