FC875563

Overview
NameFC875563
Unique NameFC875563
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC875563_ssr97 microsatellite FC875563_ssr97:97..108. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12070 contig Ccv1_Contig12070:24..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  296 DDSKHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            D  K   YRGVR R WG++ +EIR+P KKSR+WLGTF T E AA+A+D AA   +G  A  NFP
Sbjct:   20 DGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF19_ARATH (Ethylene-responsive transcription factor ERF019 OS=Arabidopsis thaliana GN=ERF019 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAI--LNFPKLAGSLPRPASK-SPRDVQAAAAKA 559
            Y+G+R R WGKWVSEIR P  + R+WLG+FST E AA AHDVA   +    ++  LNFP L    P   S+ SPR +Q AA+ A
Sbjct:   14 YKGIRRRKWGKWVSEIRVPGTRDRLWLGSFSTAEGAAVAHDVAFFCLHQPDSLESLNFPHLLN--PSLVSRTSPRSIQQAASNA 95          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.387e-14
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  305 KHPVYRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            K P YRGVR R WG++ +EIR+P KKSR+WLGTF +   AARA+D AA +++G  A  NFP
Sbjct:   23 KEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.035e-14
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPK 490
            +RGVR R WGKWV+EIREP + SR+WLGTF T + AA A+D AA ++ G  A LNFP+
Sbjct:   79 FRGVRQRIWGKWVAEIREPNRGSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFPR 136          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.188e-14
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            YRGVR R WG++ +EIR+P KKSR+WLGTF T E AA+A+D AA   +G  A  NFP
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 2
Query:  302 SKHPVYRGVRMRAWGKWVSEIREPRKK-SRIWLGTFSTPEMAARAHDVAALSIKGASAILNFP-KLAGSLPRPAS-KSPRDVQAAAAKAASMEIFDN 583
            +KH  YRGVR R WGK+ +EIR+P K  +R+WLGTF T E AA A+D+AA  ++G+ A+LNFP ++    P P    S R   ++++ ++S    +N
Sbjct:  114 AKH--YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSSSEN 208          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1J_ORYSJ (Dehydration-responsive element-binding protein 1J OS=Oryza sativa subsp. japonica GN=DREB1J PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 47/97 (48.45%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAW-GKWVSEIREPRKKS-RIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSL--PRPASKSPR----DVQAAAAKAAS 565
            +++HPV+RGVR R   G+WV E+R P  +  R+W+GTF T E AARAHD A L++ GASA LNF   A  L  PR    S      DVQ AA++A +
Sbjct:   45 ETRHPVFRGVRRRGRAGRWVCEVRVPGSRGDRLWVGTFDTAEEAARAHDAAMLALCGASASLNFADSAWLLHVPRAPVASGHDQLPDVQRAASEAVA 141          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: DRE1I_ORYSJ (Dehydration-responsive element-binding protein 1I OS=Oryza sativa subsp. japonica GN=DREB1I PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.200e-13
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  299 DSKHPVYRGVRMRAW-GKWVSEIREP-RKKSRIWLGTFSTPEMAARAHDVAALSIKG-ASAILNFPKLAG--SLPRPAS-KSPRDVQAAAAKA 559
            +++HPV+RGVR R   G+WV E+R P R+  R+WLGTF   + AARAHD A L+++G A+A LNF   A   ++P PA+ +   DVQ A A+A
Sbjct:   49 ETRHPVFRGVRRRGRAGRWVCEVRVPGRRGCRLWLGTFDAADAAARAHDAAMLALRGRAAACLNFADSAWLLAVPPPATLRCAADVQRAVARA 141          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKS-RIWLGTFSTPEMAARAHDVAALSIKGASAILNFP 487
            YRGVR R WGK+ +EIR+ RK   R+WLGTF T E AARA+D AA S++G +AILNFP
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFP 77          
BLAST of FC875563 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.567e-13
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2
Query:  317 YRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGASAILNFPKLAGSLPRP 514
            +RGVR R WG++ +EIR+P KK+R+WLGTF + E AARA+D AA +++G  A  NFP  + S P P
Sbjct:   28 FRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDSSSPPPP 93          
The following BLAST results are available for this feature:
BLAST of FC875563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
ERF4_TOBAC4.124e-1456.25Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF19_ARATH4.124e-1451.19Ethylene-responsive transcription factor ERF019 OS... [more]
ERF83_ARATH5.387e-1457.38Ethylene-responsive transcription factor 7 OS=Arab... [more]
DRE2A_ARATH7.035e-1460.34Dehydration-responsive element-binding protein 2A ... [more]
ERF4_NICSY9.188e-1459.65Ethylene-responsive transcription factor 4 OS=Nico... [more]
EF101_ARATH1.200e-1343.30Ethylene-responsive transcription factor 2 OS=Arab... [more]
DRE1J_ORYSJ1.200e-1348.45Dehydration-responsive element-binding protein 1J ... [more]
DRE1I_ORYSJ1.200e-1348.39Dehydration-responsive element-binding protein 1I ... [more]
ERF97_ARATH1.567e-1363.79Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF82_ARATH1.567e-1353.03Ethylene-responsive transcription factor 3 OS=Arab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405C10EF CTVClemen1 Citrus clementina cDNA clone C31405C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875563 ID=FC875563; Name=FC875563; organism=Citrus clementina; type=EST; length=648bp
GGATCTGCCTCTTATACTCTCTACTTCCTCTCACCTCCCACTTCCCTCCC
ACTGAATCCCCTCCAAAACGCTGCGTTTTTAATTGTTTGTTTCATGCTCT
CTCTCTCTTGCTCTCCATATACCACAACATTATATAATGACTGAGTGGAA
TAGCTCGGAGGCCGACTCGAACAACTCACCTTCGTCGTCCGGGTCGTCAT
CTCTGACAAACCCGCCAACCGGGAAACCCGTTACGTGCGACCCGGACCCG
ACCCCGACCCCGGATGCCGCCAAGAAGCAGAAGAAGAGGCCGAGGGACGA
CAGCAAGCACCCGGTGTACAGAGGGGTCCGCATGCGGGCGTGGGGGAAGT
GGGTATCCGAGATCCGAGAGCCCAGGAAGAAGAGTCGGATCTGGCTGGGC
ACGTTCTCGACGCCCGAAATGGCGGCACGCGCGCACGACGTGGCAGCATT
GAGCATCAAAGGCGCCTCCGCCATTCTCAACTTCCCCAAACTGGCCGGGT
CCCTGCCCCGACCCGCTTCCAAATCCCCGCGAGACGTCCAAGCCGCAGCT
GCCAAAGCCGCTTCGATGGAAATCTTCGACAACCCATTACCCTCAATATC
TCACTCGTCATCTTCATCATCGCTGTCGTCGTCACCATTGGTGGTACC
back to top