FC875566

Overview
NameFC875566
Unique NameFC875566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:498..1207. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 97/204 (47.55%), Postives = 117/204 (57.35%), Query Frame = 2
Query:   71 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPES--------------------KNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYV 622
            A + VPAPFL KTYQLVDDP TD ++SW E   TF+VW+  +FA+DLLPNYFKHNNFSSFVRQLNTYGFRKIVAD+WEFANE FR+G +  L EI RRK     S+Q         P +    +   S   P                         G       A LS++N +LRR N  L SELA  KK  +++I FL  +V
Sbjct:   27 AGKPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRK-----SSQPPPPPMPHQPYHHHHHLNPFSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALSEDNRQLRRRNSLLLSELAHMKKLYNDIIYFLQNHV 225          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.259e-42
Identity = 94/233 (40.34%), Postives = 132/233 (56.65%), Query Frame = 2
Query:   71 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESG-ATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSP-----------------SNSGED------------------------------MGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            AQ++VPAPFL KTYQLVDDP+TD ++SW +   +TF+VW+  +FA+D+LPNYFKHNNFSSFVRQLNTYGFRK+V ++WEFANE FR+G ++ LTEI RRKT++  +A  +       P                 +  G+D                              +G  + S   ++  G+   A  A L +EN +LRR N  L  ELA  +K  +++I F+  +V+
Sbjct:   17 AQKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSSASTASPSPPPFFAPPHFPLFHHPGVAAAQHHHAFVGDDGVVAAHGIGMPFPQPHWREPNLPVATRLLALGGPAPSPSSAEAGGAGRAATAAVLMEENERLRRSNTALLQELAHMRKLYNDIIYFVQNHVR 249          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.484e-42
Identity = 86/190 (45.26%), Postives = 117/190 (61.58%), Query Frame = 2
Query:   56 NRERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKF--ADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY 619
            N    A+   P PFL+KTY++V+DP+TD VISWNE G  F+VW+ A+FA+DLLP  FKH NFSSFVRQLNTYGFRK+   +WEF+NE FR+G RE ++ IRRRK+      ++  +   T+   + E              Q S  ++ F    L DEN  L+ +NE LS EL + KK+C +L+  +  Y
Sbjct:   28 NSTSTAELQPPPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQVVPTTTMVNQEGHQRIGIDHHHEDQQSSATSSSFVYTALLDENKCLKNENELLSCELGKTKKKCKQLMELVERY 217          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.871e-38
Identity = 81/169 (47.93%), Postives = 105/169 (62.13%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            + P PFL+KTY +VDDPSTD ++SW+ +  +F+VW   +FAKDLLP YFKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG +  L  I RRK A G + Q     +     N+ + M     S+        VE  KF  L +E  +L+RD   L  EL + ++Q
Sbjct:   35 NAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQ-----QQQPHGNAQQQMQPPGHSASVG---ACVEVGKFG-LEEEVERLKRDKNVLMQELVRLRQQ 194          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.871e-38
Identity = 83/195 (42.56%), Postives = 120/195 (61.54%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ---CDELITFLTEYVKVGPDQINRIM 655
            S+P PFL KTY +V+DP+TD ++SW+ +  +FIVW   +F++DLLP YFKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG +  L +I RRK+  G        + +++P +     G  S ++  S     VE  KF  L +E  +L+RD   L  EL + ++Q    D  +  L ++++V   +  +IM
Sbjct:   48 SLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHG------SSSSNPQSQQLSQGQGSMAALSS----CVEVGKFG-LEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIM 231          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.361e-38
Identity = 80/173 (46.24%), Postives = 101/173 (58.38%), Query Frame = 2
Query:   68 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            M   + P PFL+KTY +VDDPSTD ++SW+ +  +F+VW   +FAKDLLP YFKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG +  L  I RRK A G + Q             G            +     VE  KF  L +E  +L+RD   L  EL + ++Q
Sbjct:   33 MPSANAPPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQ--------QQQPHGHAQQQMQPPGHSASVGACVEVGKFG-LEEEVERLKRDKNVLMQELVRLRQQ 196          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 80/169 (47.34%), Postives = 104/169 (61.54%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            + P PFL KTY +VDD +TD ++SW+ +  +FIVWK  +FA+DLLP  FKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG +  L  I RRK A GQ     G+    S  ++G++          S     VE  KF  L +E  +L+RD   L  EL + ++Q
Sbjct:   33 NAPPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQ-----GQGHQRSQHSNGQN----------SSVSACVEVGKFG-LEEEVERLKRDKNVLMQELVRLRQQ 185          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.673e-36
Identity = 72/115 (62.61%), Postives = 91/115 (79.13%), Query Frame = 2
Query:   53 ANRERMAQRS---VPAPFLMKTYQLVDDPSTDDVISWN-----ESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTA 373
            A R++ A  S   VPAPFL KTYQLVDDP+TD V+SW      ES ++F+VW+  +FA+D+LPNYFKH+NFSSFVRQLNTYGFRK+V ++WEFANE FR+G ++ L EI RRK+A
Sbjct:    9 AARQKAAAASASVVPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRKSA 123          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36
Identity = 78/169 (46.15%), Postives = 99/169 (58.58%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            + P PFLMKTY++VDDP+TD V+SW     +F+VW T +FA+DLLP YFKH+NFSSFVRQLNTYGFRK+  D+WEFANE F RG +  L  I RRK        T G  +   P              P +     VE  KF  + +E   L+RD   L  EL + ++Q
Sbjct:   33 TAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRK-------PTHGNNQVQQP------------QLPAAPVPACVEVGKFG-MEEEIEMLKRDKNVLMQELVRLRQQ 181          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.859e-35
Identity = 80/169 (47.34%), Postives = 99/169 (58.58%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            S+P PFL KTY +VDDP TDDV+SW+    +F+VW   +FAK  LP YFKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG ++ L  I RRK A  Q  Q         P      +G+             VE  KF  L +E  +L+RD   L  EL + ++Q
Sbjct:   20 SIP-PFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQ--------QPQVQHSSVGA------------CVEVGKFG-LEEEVERLQRDKNVLMQELVRLRQQ 166          
The following BLAST results are available for this feature:
BLAST of FC875566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HFB4B_ORYSJ5.029e-4347.55Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB4C_ORYSJ3.259e-4240.34Heat stress transcription factor B-4c OS=Oryza sat... [more]
HSFB3_ARATH9.484e-4245.26Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HSF8_SOLLC4.871e-3847.93Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HFA1A_ARATH4.871e-3842.56Heat stress transcription factor A-1a OS=Arabidops... [more]
HSF8_SOLPE6.361e-3846.24Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HFA1D_ARATH1.567e-3647.34Heat stress transcription factor A-1d OS=Arabidops... [more]
HFB4A_ORYSJ2.673e-3662.61Putative heat stress transcription factor B-4a OS=... [more]
HSFA1_ORYSJ4.559e-3646.15Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA1E_ARATH3.859e-3547.34Heat stress transcription factor A-1e OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC31405D01EF CTVClemen1 Citrus clementina cDNA clone C31405D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875566 ID=FC875566; Name=FC875566; organism=Citrus clementina; type=EST; length=710bp
ATTATTTTTGTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAG
GGGCAAATCGGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTG
ATGAAGACGTACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATC
GTGGAATGAAAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTG
CCAAGGATCTGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTT
GTCCGCCAACTCAATACTTATGGATTTCGGAAAATCGTGGCCGACAAATG
GGAATTCGCCAACGAGAACTTCCGTCGAGGACACAGAGAATTCTTGACGG
AAATCCGTCGCCGCAAGACAGCAACAGGGCAATCGGCTCAGACGGCGGGG
AAAACGAAAGCGACATCGCCATCGAATTCAGGGGAGGACATGGGGTCCAC
GTCCACGTCATCTCCGGAATCGAAGAACCAGGGATCGGTTGAGACCGCAA
AGTTCGCGGACTTATCGGACGAGAATGCGAAATTGAGAAGAGACAACGAG
ACACTGAGTTCCGAACTGGCGCAGGCGAAGAAACAGTGCGACGAGTTAAT
TACGTTTCTGACCGAGTACGTCAAGGTGGGGCCCGACCAGATCAATCGCA
TCATGGGGCAAGGAAGCTGTGGGTCCATCCTCGATGGGTTGGTCGGCGAT
ACTGATGATG
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