FC875566

Overview
NameFC875566
Unique NameFC875566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.598e-35
Identity = 79/178 (44.38%), Postives = 102/178 (57.30%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLT 613
            S P PFL KTY LV+D  T+ V+SW++S  +FIVW    F+  LLP +FKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG +  L  IRRRKT                 SN+   M    +S  +S +   +E  ++  L  E   LRRD + L  EL + ++Q      +LT
Sbjct:   57 SGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKT-----------------SNNSNQMQQPQSSEQQSLDNFCIEVGRYG-LDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLT 216          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.573e-34
Identity = 78/169 (46.15%), Postives = 101/169 (59.76%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            SVP PFL KTY +VDDP T++V+SW+    +F+VW   +F+K LLP YFKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG ++ L  I RRK                 PS+  ++   T   S  S     VE  KF  + +E  +L+RD   L  EL + ++Q
Sbjct:   24 SVP-PFLSKTYDMVDDPLTNEVVSWSSGNNSFVVWSAPEFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRK-----------------PSHVQQNQQQTQVQS--SSVGACVEVGKFG-IEEEVERLKRDKNVLMQELVRLRQQ 171          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.118e-33
Identity = 75/186 (40.32%), Postives = 107/186 (57.53%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRK----TATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQ--GSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            P PFL KTY++VDDP TD VISW  +G +F+VW    FA  LLP YFKH+NFSSFVRQLNTYGFRK+  D+WEFANE F RG +E L  I+RR+    +    S+ ++       P+ +  ++G        ++ Q   SV  A+   L  E    R   + +   ++ A+++  ++  FL   +K
Sbjct:   51 PPPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRRPPPSSPPSSSSSSSSSQHQQQPAAACLEVGQFGRDGVVNRLQRDKSVLIAEVVKLRQEQQTTRAQMQAMEERISAAEQKQQQMTVFLARAMK 236          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.766e-33
Identity = 62/102 (60.78%), Postives = 77/102 (75.49%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQ 391
            P PFL+KTY++V+D +T+ V+SW   GA+F+VW   DF++DLLP YFKHNNFSSF+RQLNTYGFRKI  ++WEFANE+F RGH   L  I RRK     S Q
Sbjct:   18 PPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQ 119          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 76/175 (43.43%), Postives = 105/175 (60.00%), Query Frame = 2
Query:   92 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTE 616
            PFL KT+ LVDDP+ D VISW  +GA+F+VW   +FA+ +LP  FKHNNFSSFVRQLNTYGFRKI  DKWEFANE F RG +  L  I RR++   QS QT   + + S  +  E  G       E +        +  +L  ++    R  +T++  L  A+++  +L++FL +
Sbjct:   55 PFLSKTFDLVDDPTLDPVISWGLTGASFVVWDPLEFARIILPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSP--QSNQTCCSSTSQSQGSPTEVGGEIEKLRKERR----ALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAK 223          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 71/196 (36.22%), Postives = 111/196 (56.63%), Query Frame = 2
Query:   74 QRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQ 661
            Q + P+PFL KT+++V DP+T+ ++SWN  G +F+VW    F+  +LP YFKHNNFSSFVRQLNTYGFRKI A++WEF NE F  G R+ L  I+RR +++           + + S S  +        P+ + +  V   + + L  E  + R   + +   +  A+K+   +++FL   V+  P  + +I  Q
Sbjct:   22 QEAGPSPFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSS--------SPPSLNYSQSQPEAHDPGVELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFLRRAVE-NPSLLQQIFEQ 208          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 72/159 (45.28%), Postives = 93/159 (58.49%), Query Frame = 2
Query:   92 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSEL 568
            PFL KTY++VDDPSTD V+ W  +G +F+V    +F +DLLP YFKHNNFSSFVRQLNTYGFRK+  ++WEFANE+F +G R  L  I RRK     S+ + G                   + P + N+         D  +E  +L+ DN  LSSEL
Sbjct:   12 PFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSSHSQG-------------------AGPLTDNERK-------DYEEEIERLKSDNAALSSEL 144          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 74/192 (38.54%), Postives = 104/192 (54.17%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQ 661
            P PFL KTY +VDD  TD  +SW+ +  +F+VW    FA  LLP +FKHNNFSSFVRQLNTYGFRK+  D+WEFANENF RG R  L  I+RRK      + TA   ++  P       G         K    +  A+   L  E    + + + +   L   +++  +++ FL   +K  P+ + ++M Q
Sbjct:   50 PPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRK----PPSHTASNQQSLGPYLEVGHFG-YDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMK-NPEFLKQLMSQ 235          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 77/205 (37.56%), Postives = 108/205 (52.68%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSS--PESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLV 694
            P PFL KTY +VDDP+TD V+SW+ +  +F+VW    F   LLP YFKHNNFSSFVRQLNTYGFRK+  DKWEFANE F RG +  L  I+RRK      +Q +          S  ++G         + K    +  A+   L  E    + D + +  +L   +++   ++ FL+  V   P+ I ++  Q      L+  V
Sbjct:   36 PPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQS--------LGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSR-VMHNPEFIRQLFSQSEMRKELEEFV 231          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31
Identity = 74/167 (44.31%), Postives = 97/167 (58.08%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            P PFL KTY LV+DP+TD V+SW+ +G +F+VW    FA  LLP  FKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG R  L  I+RRK                 PSN+      + TS         +E  +F    +E  +L+RD   L +E+ + +++
Sbjct:   40 PPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRK----------------PPSNAPPSQQQSLTS--------CLEVGEFG-FEEEIDRLKRDKNILITEVVKLRQE 181          
The following BLAST results are available for this feature:
BLAST of FC875566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HFA6B_ARATH8.598e-3544.38Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA1B_ARATH5.573e-3446.15Heat stress transcription factor A-1b OS=Arabidops... [more]
HFA2A_ORYSJ2.118e-3340.32Heat stress transcription factor A-2a OS=Oryza sat... [more]
HFA4D_ORYSJ2.766e-3360.78Heat stress transcription factor A-4d OS=Oryza sat... [more]
HSFA3_ARATH6.161e-3343.43Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HFA7B_ARATH3.994e-3236.22Heat stress transcription factor A-7b OS=Arabidops... [more]
HFA4B_ORYSJ6.812e-3245.28Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFA2B_ORYSJ6.812e-3238.54Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFA2E_ORYSJ8.897e-3237.56Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA2C_ORYSJ1.518e-3144.31Heat stress transcription factor A-2c OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC31405D01EF CTVClemen1 Citrus clementina cDNA clone C31405D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875566 ID=FC875566; Name=FC875566; organism=Citrus clementina; type=EST; length=710bp
ATTATTTTTGTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAG
GGGCAAATCGGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTG
ATGAAGACGTACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATC
GTGGAATGAAAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTG
CCAAGGATCTGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTT
GTCCGCCAACTCAATACTTATGGATTTCGGAAAATCGTGGCCGACAAATG
GGAATTCGCCAACGAGAACTTCCGTCGAGGACACAGAGAATTCTTGACGG
AAATCCGTCGCCGCAAGACAGCAACAGGGCAATCGGCTCAGACGGCGGGG
AAAACGAAAGCGACATCGCCATCGAATTCAGGGGAGGACATGGGGTCCAC
GTCCACGTCATCTCCGGAATCGAAGAACCAGGGATCGGTTGAGACCGCAA
AGTTCGCGGACTTATCGGACGAGAATGCGAAATTGAGAAGAGACAACGAG
ACACTGAGTTCCGAACTGGCGCAGGCGAAGAAACAGTGCGACGAGTTAAT
TACGTTTCTGACCGAGTACGTCAAGGTGGGGCCCGACCAGATCAATCGCA
TCATGGGGCAAGGAAGCTGTGGGTCCATCCTCGATGGGTTGGTCGGCGAT
ACTGATGATG
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