FC875566

Overview
NameFC875566
Unique NameFC875566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11368 contig Ccv1_Contig11368:498..1207. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFA9_ORYSJ (Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.164e-29
Identity = 73/181 (40.33%), Postives = 103/181 (56.91%), Query Frame = 2
Query:   38 GGW*GANRERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAK 580
            GG   AN   + + S  APFL K Y +V DP+TD+VISW E G +F++W +  F +DL   +FKH+NF+SF+RQLNTYGFRK+  D+WE+ANE F  G +  L  I+RRK           K+   SPS   E   +   ++P ++N   +E  K+  L  E   L+RD   L  +L   +
Sbjct:   32 GGASTANGPVVPKPSEVAPFLTKVYDMVSDPATDNVISWAEGGGSFVIWDSHAFERDL-HRHFKHSNFTSFIRQLNTYGFRKVHPDRWEWANEGFIMGQKHLLKTIKRRK-----------KSSQESPS---EIQKAPVKTAPGTEN---IEIGKYGGLEKEVETLKRDKALLMQQLVDLR 194          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFC1A_ORYSJ (Heat stress transcription factor C-1a OS=Oryza sativa subsp. japonica GN=HSFC1A PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 73/187 (39.04%), Postives = 106/187 (56.68%), Query Frame = 2
Query:   89 APFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTS----SPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQ-------AKKQCDELITFLTE 616
            APF+ KTYQ+V DP TD ++ W     +F+V   A F++ LLP +FKH NFSSFVRQLNTYGFRK+  D+WEFA+E+F RG    L  I RRK   G+     G    +    +GE   + + +    S E ++      AK A L +E  +LR +   +  ELA+        +++ D+L++FL +
Sbjct:   25 APFVAKTYQMVCDPRTDALVRWGRDNNSFVVVDPAAFSQLLLPCFFKHGNFSSFVRQLNTYGFRKVHPDRWEFAHESFLRGQTHLLPRIVRRK-KRGEGGGGGGGASCSFGGGAGEHQVAAAAASVGMSGEEEDAAEDVLAKEAALFEEVQRLRHEQTAIGEELARMSQRLQATERRPDQLMSFLAK 210          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQT 394
            P  FL KTY +V+D ST++++SW+    +FIVW+   FA   LP  FKHNNFSSFVRQLNTYGF+KI  ++WEFANE+F +G R  L  I+RRKT++    Q+
Sbjct:   17 PTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQTQS 119          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 65/175 (37.14%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   92 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTE 616
            PFL KTY++VDD S+D V++W+E+  +FIV   A+F++DLLP +FKH NFSSF+RQLNTYGFRK+  +KWEF N++F RG    +  I RRK     S       +A +P    E   S        KN+     A+  +   E  +      TL   L   ++    ++ ++++
Sbjct:   13 PFLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLV---NLQAQNPLTESE-RRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIVAYVSQ 183          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.569e-28
Identity = 61/178 (34.27%), Postives = 98/178 (55.06%), Query Frame = 2
Query:   92 PFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            PFL KT+++VDD  TD V+SW+ +  +FI+W + +F+++LLP YFKH NFSSF+RQLN+YGF+K+ +D+WEFANE F+ G +  L  I+RR             +K T   N      +T T     K + S    +   L  +  + +    T+  ++     +   +++F  +  K
Sbjct:   71 PFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRR-------------SKNTKCCNKEASTTTTETEVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFFAKLAK 235          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFC2B_ORYSJ (Heat stress transcription factor C-2b OS=Oryza sativa subsp. japonica GN=HSFC2B PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 77/202 (38.12%), Postives = 109/202 (53.96%), Query Frame = 2
Query:   89 APFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTAT--GQSAQTAGKTKATSPSNSG----EDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGS 676
            APF+ KTY++V+DP TD VI W +   +F+V     F++ LLP +FKHNNFSSFVRQLNTYGFRK+  D+WEFA+ +F RG    L  I RR +A   G      GK +  S    G    EDM   +T     K +      + A      A  RR  ET        +++  +++ FL + V    D+++R++G G  G+
Sbjct:   10 APFVWKTYRMVEDPGTDGVIGWGKGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDRWEFAHASFLRGQTHLLRNIVRRGSAAAGGGGGGGGGKRRDASADGGGGGGDEDMTMVATEVVRLKQEQRTIDDRVA------AMWRRVQET--------ERRPKQMLAFLLKVVG-DRDKLHRLVGGGGNGN 196          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFA6B_ORYSJ (Heat stress transcription factor A-6a OS=Oryza sativa subsp. japonica GN=HSFA6B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 2
Query:   86 PAPFLMKTYQLVDDPSTDDVISWNE--SGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTA 373
            PAPF+ KTY++V D +TD V+SW    SGA+F+VW     A  +LP +FKH NFSSFVRQLNTYGFRK+  D+WEFANE F  G +  L  I+RR+ +
Sbjct:   91 PAPFVAKTYEMVADAATDAVVSWGPGGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDRWEFANEAFLAGQKHLLKNIKRRRVS 188          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 2
Query:   89 APFLMKTYQLVDDPSTDDVISWNESGA-TFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMG 445
            APFL K Y +VDD +TD +ISW+ S   +F++  T  F+  LLP YFKH+NFSSF+RQLN YGFRK+ AD+WEFAN+ F RG ++ L  + RRK    QS++ + K ++TS + + E  G
Sbjct:   18 APFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNV--QSSEQS-KHESTSTTYAQEKSG 134          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFC2A_ORYSJ (Heat stress transcription factor C-2a OS=Oryza sativa subsp. japonica GN=HSFC2A PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 67/187 (35.83%), Postives = 105/187 (56.15%), Query Frame = 2
Query:   89 APFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINR 649
            APF+ KTY++VDDP+TD VI+W     +F+V     F++ LLP +FKH+NFSSFVRQLNTYGFRK+  D+WEFA+ +F RG    L  I RR +  G + +   K +A      GE       ++ +   + +V   + A L  E  ++      +   + + +++  +++ FL +   VG  Q+ R
Sbjct:   13 APFVAKTYRMVDDPATDGVIAWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDRWEFAHVSFLRGQTHLLRRIVRRSSGGGGAKR---KEEAGGCGGGGE------AAAGDVDEESAVVALEVARLRREQREIEGRVAAMWRRVQETERRPKQMLAFLVKV--VGDPQVLR 188          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HFC1B_ORYSJ (Heat stress transcription factor C-1b OS=Oryza sativa subsp. japonica GN=HSFC1B PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 63/176 (35.80%), Postives = 95/176 (53.98%), Query Frame = 2
Query:   89 APFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTE 616
            APF+ KT+ +V DPST+ V+ W  +G TF+V   A F+  LLP+YFKH NF+SFVRQLNTYGFRK+  D+WEFA+E+F RG  + L  I R+K                     G   G         + +G++E  +   L +E   +  + + +   L  A+ +  +++ FL +
Sbjct:   23 APFVAKTFHMVSDPSTNAVVRWGGAGNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDRWEFAHESFLRGQAQLLPRIVRKK------------------KKGGAAPGCRELCEEGEEVRGTIEAVQ--RLREEQRGMEEELQAMDQRLRAAESRPGQMMAFLAK 178          
The following BLAST results are available for this feature:
BLAST of FC875566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HSFA9_ORYSJ3.164e-2940.33Heat stress transcription factor A-9 OS=Oryza sati... [more]
HFC1A_ORYSJ7.050e-2939.04Heat stress transcription factor C-1a OS=Oryza sat... [more]
HFA6A_ARATH3.499e-2854.37Heat stress transcription factor A-6a OS=Arabidops... [more]
HFA4C_ARATH3.499e-2837.14Heat stress transcription factor A-4c OS=Arabidops... [more]
HSFA9_ARATH4.569e-2834.27Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HFC2B_ORYSJ1.736e-2738.12Heat stress transcription factor C-2b OS=Oryza sat... [more]
HFA6B_ORYSJ1.470e-2656.12Heat stress transcription factor A-6a OS=Oryza sat... [more]
HSFA8_ARATH2.507e-2650.00Heat stress transcription factor A-8 OS=Arabidopsi... [more]
HFC2A_ORYSJ4.277e-2635.83Heat stress transcription factor C-2a OS=Oryza sat... [more]
HFC1B_ORYSJ7.295e-2635.80Heat stress transcription factor C-1b OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC31405D01EF CTVClemen1 Citrus clementina cDNA clone C31405D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875566 ID=FC875566; Name=FC875566; organism=Citrus clementina; type=EST; length=710bp
ATTATTTTTGTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAG
GGGCAAATCGGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTG
ATGAAGACGTACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATC
GTGGAATGAAAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTG
CCAAGGATCTGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTT
GTCCGCCAACTCAATACTTATGGATTTCGGAAAATCGTGGCCGACAAATG
GGAATTCGCCAACGAGAACTTCCGTCGAGGACACAGAGAATTCTTGACGG
AAATCCGTCGCCGCAAGACAGCAACAGGGCAATCGGCTCAGACGGCGGGG
AAAACGAAAGCGACATCGCCATCGAATTCAGGGGAGGACATGGGGTCCAC
GTCCACGTCATCTCCGGAATCGAAGAACCAGGGATCGGTTGAGACCGCAA
AGTTCGCGGACTTATCGGACGAGAATGCGAAATTGAGAAGAGACAACGAG
ACACTGAGTTCCGAACTGGCGCAGGCGAAGAAACAGTGCGACGAGTTAAT
TACGTTTCTGACCGAGTACGTCAAGGTGGGGCCCGACCAGATCAATCGCA
TCATGGGGCAAGGAAGCTGTGGGTCCATCCTCGATGGGTTGGTCGGCGAT
ACTGATGATG
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