FC875566

Overview
NameFC875566
Unique NameFC875566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF_XENLA (Heat shock factor protein OS=Xenopus laevis GN=hsf1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.003e-24
Identity = 72/204 (35.29%), Postives = 101/204 (49.51%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMG 658
            +VPA FL K + LV+DP TD +I W+  G +F V+    FAK++LP YFKHNN +SFVRQLN YGFRK+V            D  EF +  F RG  + L  I+R+         T   TK+       + +G   +     K +      +   +  EN  L R+  +L  +  Q +K  ++LI FL   V     Q NRI+G
Sbjct:   11 NVPA-FLAKLWTLVEDPDTDPLICWSPEGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPYFIRGQEQLLENIKRK-------VNTMSATKSDEVKVRQDSVGKLISDVQSMKGKQESIDGRLLSMKHENEALWREVASLRQKHTQQQKVVNKLIQFLVSLV-----QSNRILG 201          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF1_MOUSE (Heat shock factor protein 1 OS=Mus musculus GN=Hsf1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 75/204 (36.76%), Postives = 102/204 (50.00%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMG 658
            +VPA FL K + LV DP TD +I W+ SG +F V+    FAK++LP YFKHNN +SFVRQLN YGFRK+V            D  EF +  F RG  + L  I+R+ T+         K +  S +          T     K +     +K   +  EN  L R+  +L  + AQ +K  ++LI FL   V     Q NRI+G
Sbjct:   14 NVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDSVTR-------LLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLV-----QSNRILG 204          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF1_HUMAN (Heat shock factor protein 1 OS=Homo sapiens GN=HSF1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.521e-23
Identity = 75/204 (36.76%), Postives = 102/204 (50.00%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMG 658
            +VPA FL K + LV DP TD +I W+ SG +F V+    FAK++LP YFKHNN +SFVRQLN YGFRK+V            D  EF +  F RG  + L  I+R+ T+         K +  S       +    T     K +     +K   +  EN  L R+  +L  + AQ +K  ++LI FL   V     Q NRI+G
Sbjct:   14 NVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLKSEDIKIRQDS-------VTKLLTDVQLMKGKQECMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLV-----QSNRILG 204          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF1_CHICK (Heat shock factor protein 1 OS=Gallus gallus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.987e-23
Identity = 71/199 (35.68%), Postives = 99/199 (49.75%), Query Frame = 2
Query:   95 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMG 658
            FL K + LV+DP TD +I W+ SG +F V+    FAK++LP YFKHNN +SFVRQLN YGFRK+V            D  EF +  F RG    L  I+R+ T+         K +        +++    T     K +     +K   +  EN  L R+  +L  + AQ +K  ++LI FL   V     Q NRI+G
Sbjct:   23 FLTKLWTLVEDPETDPLICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPEKDDTEFQHPYFIRGQEHLLENIKRKVTSVSSIKNEDIKVRQ-------DNVTKLLTDIQVMKGKQESMDSKLIAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLV-----QSNRILG 209          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF1_BOVIN (Heat shock factor protein 1 OS=Bos taurus GN=HSF1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 74/204 (36.27%), Postives = 101/204 (49.51%), Query Frame = 2
Query:   80 SVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMG 658
            +VPA FL K + LV DP TD +I W+ SG +F V     FAK++LP YFKH+N +SFVRQLN YGFRK+V            D  EF +  F RG  + L  I+R+ T+         K +  S       +    T     K +     +K   +  EN  L R+  +L  + AQ +K  ++LI FL   V     Q NRI+G
Sbjct:   14 NVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVLDQGQFAKEVLPKYFKHSNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSVSTLRSEDIKIRQDS-------VTKLLTDVQLMKGKQESMDSKLLAMKHENEALWREVASLRQKHAQQQKVVNKLIQFLISLV-----QSNRILG 204          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF3_CHICK (Heat shock factor protein 3 OS=Gallus gallus GN=HSF3 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.869e-22
Identity = 63/197 (31.98%), Postives = 99/197 (50.25%), Query Frame = 2
Query:   71 AQRSVPAP-FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            A  + P P FL K + LV+DP +DDVI W+ +G  F +     FAK+LLP YFKHNN SSF+RQLN YGFRK+VA              EF +  F++G+   L  I+R+ +A           +        ED+    +   E + Q +    + A++  EN  L ++   L  + +Q +K   +++ F+   ++
Sbjct:   10 APGAAPVPGFLAKLWALVEDPQSDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFRKVVALENGMITAEKNSVIEFQHPFFKQGNAHLLENIKRKVSA----------VRTEDLKVCAEDLHKVLSEVQEMREQQNNMDIRLANMKRENKALWKEVAVLRQKHSQQQKLLSKILQFILSLMR 196          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF4_HUMAN (Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.410e-21
Identity = 71/195 (36.41%), Postives = 98/195 (50.26%), Query Frame = 2
Query:   83 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGP 634
            VPA FL K + LV DP TD +I W+ SG +F+V   + FAK++LP YFKH+N +SFVRQLN YGFRK+V+           D  EF + +F RG  + L  +RR+  A        G      P + G  +G           Q S E A+  +L  +N  L R+  TL     Q  +   +LI  L   ++ GP
Sbjct:   18 VPA-FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPA------LRGDDGRWRPEDLGRLLGEVQALRGV---QESTE-ARLRELRQQNEILWREVVTLRQSHGQQHRVIGKLIQCLFGPLQAGP 201          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF_YEAST (Heat shock factor protein OS=Saccharomyces cerevisiae GN=HSF1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.066e-21
Identity = 66/193 (34.20%), Postives = 97/193 (50.26%), Query Frame = 2
Query:   59 RERMAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKI-----------VADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSN------SGEDMGSTSTSSPES-KNQGSVETAKFADLSDE-NAKLRRDNETLSSELAQAK 580
            R   + +S PA F+ K + +++D S   +I W E G +FIV    +F   +LP YFKH+NF+SFVRQLN YG+ K+             DKW+F NENF RG  + L +I R+K ++      +G     + SN      +G +  + + SS  S  N G +   K   L +E N   + D   +  EL Q K
Sbjct:  164 RRYQSHKSRPA-FVNKLWSMLNDDSNTKLIQWAEDGKSFIVTNREEFVHQILPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSIQSSSDDKWQFENENFIRGREDLLEKIIRQKGSSNNHNSPSGNGNPANGSNIPLDNAAGSNNSNNNISSSNSFFNNGHLLQGKTLRLMNEANLGDKNDVTAILGELEQIK 355          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF_SCHPO (Heat shock factor protein OS=Schizosaccharomyces pombe GN=hsf1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.228e-21
Identity = 62/184 (33.70%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   95 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKI------------VADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFL 610
            F  K Y +V+D STD +I W++ G +F+V    DFAK +LP YFKHNNFSSFVRQLN YGF K+              +  EFAN NF+R   E L  + R+K            ++    SN+  DM + S+     + Q    + + + +  +NA L ++N        + ++  D+++ FL
Sbjct:   53 FSNKLYNMVNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQQGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKAG----------SQPVEESNTSLDMSTISSELQNIRIQQMNLSNELSRIQVDNAALWQENMENRERQRRHQETIDKILRFL 226          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF4_MOUSE (Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.205e-20
Identity = 70/195 (35.90%), Postives = 98/195 (50.26%), Query Frame = 2
Query:   83 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGP 634
            VPA FL K + LV DP TD +I W+ SG +F+V   + FAK++LP YFKH+N +SFVRQLN YGFRK+V+           D  EF + +F RG  + L  +RR+  A        G      P +    +G           Q S E A+  +L  +N  L R+  TL    +Q  +   +LI  L   ++ GP
Sbjct:   17 VPA-FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPA------LRGDDSRWRPEDLSRLLGEVQALRGV---QESTE-ARLQELRQQNEILWREVVTLRQSHSQQHRVIGKLIQCLFGPLQTGP 200          
The following BLAST results are available for this feature:
BLAST of FC875566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HSF_XENLA4.003e-2435.29Heat shock factor protein OS=Xenopus laevis GN=hsf... [more]
HSF1_MOUSE1.521e-2336.76Heat shock factor protein 1 OS=Mus musculus GN=Hsf... [more]
HSF1_HUMAN1.521e-2336.76Heat shock factor protein 1 OS=Homo sapiens GN=HSF... [more]
HSF1_CHICK1.987e-2335.68Heat shock factor protein 1 OS=Gallus gallus GN=HS... [more]
HSF1_BOVIN1.682e-2236.27Heat shock factor protein 1 OS=Bos taurus GN=HSF1 ... [more]
HSF3_CHICK2.869e-2231.98Heat shock factor protein 3 OS=Gallus gallus GN=HS... [more]
HSF4_HUMAN5.410e-2136.41Heat shock factor protein 4 OS=Homo sapiens GN=HSF... [more]
HSF_YEAST7.066e-2134.20Heat shock factor protein OS=Saccharomyces cerevis... [more]
HSF_SCHPO9.228e-2133.70Heat shock factor protein OS=Schizosaccharomyces p... [more]
HSF4_MOUSE1.205e-2035.90Heat shock factor protein 4 OS=Mus musculus GN=Hsf... [more]

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Properties
Property NameValue
Genbank descriptionC31405D01EF CTVClemen1 Citrus clementina cDNA clone C31405D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875566 ID=FC875566; Name=FC875566; organism=Citrus clementina; type=EST; length=710bp
ATTATTTTTGTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAG
GGGCAAATCGGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTG
ATGAAGACGTACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATC
GTGGAATGAAAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTG
CCAAGGATCTGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTT
GTCCGCCAACTCAATACTTATGGATTTCGGAAAATCGTGGCCGACAAATG
GGAATTCGCCAACGAGAACTTCCGTCGAGGACACAGAGAATTCTTGACGG
AAATCCGTCGCCGCAAGACAGCAACAGGGCAATCGGCTCAGACGGCGGGG
AAAACGAAAGCGACATCGCCATCGAATTCAGGGGAGGACATGGGGTCCAC
GTCCACGTCATCTCCGGAATCGAAGAACCAGGGATCGGTTGAGACCGCAA
AGTTCGCGGACTTATCGGACGAGAATGCGAAATTGAGAAGAGACAACGAG
ACACTGAGTTCCGAACTGGCGCAGGCGAAGAAACAGTGCGACGAGTTAAT
TACGTTTCTGACCGAGTACGTCAAGGTGGGGCCCGACCAGATCAATCGCA
TCATGGGGCAAGGAAGCTGTGGGTCCATCCTCGATGGGTTGGTCGGCGAT
ACTGATGATG
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