FC875566

Overview
NameFC875566
Unique NameFC875566
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF4_CANFA (Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.056e-20
Identity = 66/194 (34.02%), Postives = 96/194 (49.48%), Query Frame = 2
Query:   83 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVG 631
            VPA FL K + LV DP TD +I W+ SG +F+V   + FAK++LP YFKH+N +SFVRQLN YGFRK+V+           D  EF + +F RG  + L  +RR+  A           ++       ED+G         +    +  A+  +L  +N  L R+  TL     Q  +   +LI  L   ++ G
Sbjct:   17 VPA-FLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVPA----------LRSDDGRWRPEDLGRLLGEVQALRGVQEITEARLRELRQQNEILWREVVTLRQSHGQQHRVIGKLIQCLFGPLQTG 199          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF2_MOUSE (Heat shock factor protein 2 OS=Mus musculus GN=Hsf2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 58/197 (29.44%), Postives = 101/197 (51.27%), Query Frame = 2
Query:   68 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            M Q S    FL K + LV++  T++ I+W+++G +F+V     FAK++LP YFKHNN +SFVRQLN YGFRK+V               EF +  F++G  + L  I+R+             +K        ED+    +S+ + + +     ++ ++L  EN  L ++   L ++ AQ ++   +++ F+   V+
Sbjct:    1 MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIESGIIKQERDGPVEFQHPYFKQGQDDLLENIKRK----------VSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQ 187          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 58/197 (29.44%), Postives = 101/197 (51.27%), Query Frame = 2
Query:   68 MAQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            M Q S    FL K + LV++  T++ I+W+++G +F+V     FAK++LP YFKHNN +SFVRQLN YGFRK+V               EF +  F++G  + L  I+R+             +K        ED+    +S+ + + +     ++ ++L  EN  L ++   L ++ AQ ++   +++ F+   V+
Sbjct:    1 MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRK----------VSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQ 187          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.273e-19
Identity = 63/191 (32.98%), Postives = 101/191 (52.88%), Query Frame = 2
Query:   83 VPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA----------DKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            VPA FL K ++LVDD  T+ +I W + G +F++   A FAK+LLP  +KHNN +SF+RQLN YGF KI +          D+ EF++  F+R +  FL +  +RK +  ++    G  K        E M    T     + +     ++F+ +  EN  L R+  +L  + A+ ++  ++LI FL   V+
Sbjct:   46 VPA-FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKR-NSPFLLDQIKRKISNNKNGDDKGVLKP-------EAMSKILTDVKVMRGRQDNLDSRFSAMKQENEVLWREIASLRQKHAKQQQIVNKLIQFLITIVQ 227          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF_KLULA (Heat shock factor protein OS=Kluyveromyces lactis GN=HSF PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.599e-18
Identity = 65/221 (29.41%), Postives = 106/221 (47.96%), Query Frame = 2
Query:   77 RSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADL--SDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGD 700
            R+ PA F+ K + +V+D S +  I W+ SG + +V     F +++LP YFKH+NF+SFVRQLN YG+ K+              +WEF NENF+RG    L  I R+K                  SN+    G+T+           +ET K+  L  +++  ++ +DNE L  E   A+++       L + ++     ++ + G  S  +I +G   D
Sbjct:  192 RARPA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENENFKRGKEYLLENIVRQK------------------SNTNILGGTTNAEVDIHILLNELETVKYNQLAIAEDLKRITKDNEMLWKENMMARERHQSQQQVLEKLLRF----LSSVFGPNSAKTIGNGFQPD 389          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: HSF2_CHICK (Heat shock factor protein 2 OS=Gallus gallus GN=HSF2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 58/196 (29.59%), Postives = 101/196 (51.53%), Query Frame = 2
Query:   71 AQRSVPAPFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-ADKW----------EFANENFRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK 625
            A   VPA FL K + LV +  ++ +I+W+++G +F+V     FAK++LP YFKHNN +SFVRQLN YGFRK+V  D            EF +  F++G  + L  I+R+             ++      S ED+    +S+ + + +     ++ + L  EN  L R+   L ++  + ++   +++ F+   V+
Sbjct:   17 AGAGVPA-FLSKLWALVGEAPSNQLITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHVDSGIVKLERDGLVEFQHPYFKQGREDLLEHIKRK----------VSSSRPEENKISQEDLSKIISSAQKVEIKQETIESRLSALKRENESLWREVAELRAKHLKQQQVIRKIVQFIVTLVQ 201          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: PRR1_SCHPO (Transcription factor prr1 OS=Schizosaccharomyces pombe GN=prr1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.012e-16
Identity = 37/100 (37.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   95 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK----------WEFANENFRRGHREFLTEIRRR 364
            F+ K + ++++P    ++ W++SG +FIV  T +F K +LP +FKH+NF+SFVRQLN Y F K+  ++          WEF +++F+  H++ L  I+R+
Sbjct:   10 FVRKLFNMLEEPEYRHILRWSDSGDSFIVLDTNEFTKTILPRHFKHSNFASFVRQLNKYDFHKVRHEEGAPSIYGEGAWEFRHDDFQLHHKDLLDNIKRK 109          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: SKN7_YEAST (Transcription factor SKN7 OS=Saccharomyces cerevisiae GN=SKN7 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.240e-16
Identity = 54/183 (29.51%), Postives = 87/183 (47.54%), Query Frame = 2
Query:   95 FLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV------------ADKWEFANENFRRGHREFLTEIRRRKTA-------TGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQ 586
            F+ K ++++++    D+++W E+G +F+V  T  F   +LPN+FKH+NF+SFVRQLN Y F K+                WEF +  FR  + + L  I+R+  A         Q A     ++ T+P+N    + + ST+     N  S          D    LRR  + L  EL  +K +
Sbjct:   87 FVRKLFRILENNEYPDIVTWTENGKSFVVLDTGKFTTHILPNHFKHSNFASFVRQLNKYDFHKVKRSPEERQRCKYGEQSWEFQHPEFRVHYGKGLDNIKRKIPAQRKVLLDESQKALLHFNSEGTNPNNPSGSLLNESTTELLLSNTVS---------KDAFGNLRRRVDKLQKELDMSKME 260          
BLAST of FC875566 vs. ExPASy Swiss-Prot
Match: SFL1_YEAST (Flocculation suppression protein OS=Saccharomyces cerevisiae GN=SFL1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 53/193 (27.46%), Postives = 78/193 (40.41%), Query Frame = 2
Query:   89 APFLMKTYQLVDDPSTDDVISWNESGATFIVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK--------------------------------------------------WEFANEN--FRRGHREFLTEIRRRKTATGQSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFAD 511
            A F+ K YQ+++D S  D+I W  SG +F++     F+K  L  YFKH N +SFVRQLN YGF K+  D                                                   WEF + +  F++G  E L  I+RR ++   S+  + K    + SN   D+ S +   P S    S  +  F +
Sbjct:   63 AIFIHKLYQILEDESLHDLIWWTPSGLSFMIKPVERFSK-ALATYFKHTNITSFVRQLNIYGFHKVSHDHSSNDANSGDDANTNDDSNTHDDNSGNKNSSGDENTGGGVQEKEKSNPTKIWEFKHSSGIFKKGDIEGLKHIKRRASSRNNSSINSRK----NSSNQNYDIDSGARVRPSSIQDPSTSSNSFGN 250          
The following BLAST results are available for this feature:
BLAST of FC875566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HSF4_CANFA2.056e-2034.02Heat shock factor protein 4 OS=Canis familiaris GN... [more]
HSF2_MOUSE1.333e-1929.44Heat shock factor protein 2 OS=Mus musculus GN=Hsf... [more]
HSF2_HUMAN1.333e-1929.44Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF_DROME2.273e-1932.98Heat shock factor protein OS=Drosophila melanogast... [more]
HSF_KLULA5.599e-1829.41Heat shock factor protein OS=Kluyveromyces lactis ... [more]
HSF2_CHICK7.312e-1829.59Heat shock factor protein 2 OS=Gallus gallus GN=HS... [more]
PRR1_SCHPO4.012e-1637.00Transcription factor prr1 OS=Schizosaccharomyces p... [more]
SKN7_YEAST5.240e-1629.51Transcription factor SKN7 OS=Saccharomyces cerevis... [more]
SFL1_YEAST6.629e-1127.46Flocculation suppression protein OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC31405D01EF CTVClemen1 Citrus clementina cDNA clone C31405D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875566 ID=FC875566; Name=FC875566; organism=Citrus clementina; type=EST; length=710bp
ATTATTTTTGTTTTTCTCAAAAAGGGTAGTGATTTTGGGGGGTTGGTGAG
GGGCAAATCGGGAAAGAATGGCGCAGAGGTCGGTTCCGGCGCCGTTCCTG
ATGAAGACGTACCAGTTGGTGGATGATCCGAGCACTGATGATGTGATATC
GTGGAATGAAAGTGGCGCCACTTTTATTGTCTGGAAAACTGCTGATTTTG
CCAAGGATCTGCTGCCTAATTACTTCAAGCACAACAATTTTTCAAGCTTT
GTCCGCCAACTCAATACTTATGGATTTCGGAAAATCGTGGCCGACAAATG
GGAATTCGCCAACGAGAACTTCCGTCGAGGACACAGAGAATTCTTGACGG
AAATCCGTCGCCGCAAGACAGCAACAGGGCAATCGGCTCAGACGGCGGGG
AAAACGAAAGCGACATCGCCATCGAATTCAGGGGAGGACATGGGGTCCAC
GTCCACGTCATCTCCGGAATCGAAGAACCAGGGATCGGTTGAGACCGCAA
AGTTCGCGGACTTATCGGACGAGAATGCGAAATTGAGAAGAGACAACGAG
ACACTGAGTTCCGAACTGGCGCAGGCGAAGAAACAGTGCGACGAGTTAAT
TACGTTTCTGACCGAGTACGTCAAGGTGGGGCCCGACCAGATCAATCGCA
TCATGGGGCAAGGAAGCTGTGGGTCCATCCTCGATGGGTTGGTCGGCGAT
ACTGATGATG
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