FC875568

Overview
NameFC875568
Unique NameFC875568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.635e-62
Identity = 119/193 (61.66%), Postives = 136/193 (70.47%), Query Frame = 2
Query:  137 GERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPC-RGKYY-GRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HETTGGW DAP G YAWGYC++ EI+   PYC  + NY C  GK Y GRGPIQL+WNYNY  CG+DL     LL  P+L+ TDPV+SFK+AIWFWM  Q PKPSCH VIT  W PS
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDL--KLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPS 265          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 1.635e-62
Identity = 117/191 (61.26%), Postives = 139/191 (72.77%), Query Frame = 2
Query:  149 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF AQT HETTG  GW  AP G YAWGYC+  E++PPS YC  + NYPC  GK Y+GRGP+QL+WNYNY +CG  +  G +LLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VI   W PS
Sbjct:   43 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAI--GVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPS 230          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.635e-62
Identity = 117/191 (61.26%), Postives = 139/191 (72.77%), Query Frame = 2
Query:  149 TGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FPAF  +G++  R REIAAF AQT HETTG  GW  AP G YAWGYC+  E++PPS YC  + NYPC  GK Y+GRGP+QL+WNYNY +CG  +  G +LLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VI   W PS
Sbjct:   65 SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAI--GVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPS 252          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.790e-62
Identity = 114/200 (57.00%), Postives = 140/200 (70.00%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   + REIAAF  QT HETTGGW  AP G YAWGYCF+ E   PS YC  +  +PC    +YYGRGPIQ++WNYNY +CG  +  G +LLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VIT  W PS
Sbjct:   51 CGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLRE-QNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAI--GVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPS 244          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.643e-62
Identity = 115/203 (56.65%), Postives = 140/203 (68.97%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  CG  +  G +LLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS
Sbjct:   57 CGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPS 256          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 114/201 (56.72%), Postives = 139/201 (69.15%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  CG  +  G +LLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PS
Sbjct:   58 CPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPS 256          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.808e-61
Identity = 116/201 (57.71%), Postives = 140/201 (69.65%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  CG  +  G +LLNNPDL+ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS
Sbjct:   49 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPS 246          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.084e-61
Identity = 109/186 (58.60%), Postives = 134/186 (72.04%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F  FG +G+ T R RE+AAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY  CG  +  G+ LLNNPDL+AT+ V+SFKSAIWFWMTAQ PKPSCH+VIT  W PS
Sbjct:   79 GPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAI--GQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPS 262          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.974e-61
Identity = 114/201 (56.72%), Postives = 139/201 (69.15%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            CG G  C  +  G     G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  CG  +  G +LLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VIT  W+PS
Sbjct:   53 CGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPS 250          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.974e-61
Identity = 111/187 (59.36%), Postives = 135/187 (72.19%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARG-FYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR--GKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            G   G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FP FG +G+ T R REIAAFFAQT HETTGGW  AP G YAWGYCF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  CG  +  G +LLNNPDL+ATD ++SFKSAIWFWMT Q PKPSCH+VIT  W+PS
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAI--GVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPS 244          
The following BLAST results are available for this feature:
BLAST of FC875568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI6_POPTR1.635e-6261.66Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI2_GOSHI1.635e-6261.26Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.635e-6261.26Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_PEA2.790e-6257.00Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIT_SOLTU3.643e-6256.65Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI4_SOLTU8.116e-6256.72Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_SOLTU1.808e-6157.71Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC3.084e-6158.60Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIC_SOLLC8.974e-6156.72Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_SOLTU8.974e-6159.36Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC31405D04EF CTVClemen1 Citrus clementina cDNA clone C31405D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875568 ID=FC875568; Name=FC875568; organism=Citrus clementina; type=EST; length=703bp
GACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGA
GGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
CGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCC
GTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAA
GACCTAGGGCCAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCAC
AGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCA
TCA
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