FC875568

Overview
NameFC875568
Unique NameFC875568
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.135e-55
Identity = 102/176 (57.95%), Postives = 127/176 (72.16%), Query Frame = 2
Query:  176 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R RE+AAFF QT HETTGGW  AP G +AWGYC ++EI+P  P           YYGRGPIQLT  YNY   G+ L  G +L+NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VIT++W PS
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP----------PYYGRGPIQLTHKYNYQLAGDAL--GLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPS 189          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.652e-54
Identity = 99/182 (54.40%), Postives = 124/182 (68.13%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R G+ +G G+EL+NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VI  +W PS
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPS 187          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.135e-54
Identity = 98/182 (53.85%), Postives = 125/182 (68.68%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HET GG      G +  GYCF+ +I               +YYGRGPIQLT   NY R G+ +G G++L+NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VI  +W PS
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQIDQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPS 187          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.534e-52
Identity = 99/189 (52.38%), Postives = 125/189 (66.14%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPS--PYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            G+ G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +     RE+AAF AQT HETTGGW  AP G YAWGYCF  E    +   YC  +  +PC    KYYGRGPIQL++N+NY   G+ +G   +LL +PDL+A+D  +SF +A WFWMT Q PKPSCH V T +W PS
Sbjct:   75 GSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGA--DLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPS 261          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.178e-50
Identity = 91/176 (51.70%), Postives = 118/176 (67.05%), Query Frame = 2
Query:  191 SREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPS 703
            +  MFE +LP RN+  CP +GFYTYDA+  A + +P FG +G++  R RE+AAFFAQT  ET+G         + WGYC ++E++P S YC+     +YPC   YYGRGP+QL WNYNY  CG  L  G+ LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVIT EW PS
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYL--GQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPS 241          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.127e-50
Identity = 97/182 (53.30%), Postives = 125/182 (68.68%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            G+   ++G I++ ++F ++L  RND RCPA+GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A  G +A GYCF+ E                 +YGRGPIQLT   NY   G+ +  G++L+NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VIT +W PS
Sbjct:   13 GSFAQDVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE----------GNQMGSGFYGRGPIQLTGQSNYDLAGQAI--GQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPS 181          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.486e-47
Identity = 101/201 (50.25%), Postives = 126/201 (62.69%), Query Frame = 2
Query:  116 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNET-MRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEI----SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            C +  +     +G    G  +G +I++ +F  +LP R++ +CPARGFYTYDAFI AA +FPAFG SG    +  RE+AAFF QT HETTGG R +   ++ WGYCF  EI    SPP             YYGRGPIQLT   NY   G  L  G +L+ NPDL++TD V+SFK+AIWFWMTAQ  KPSCH+VI   W PS
Sbjct:   14 CAAASLLAVAASGAAAQG--VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGS-SDQFQWGYCFKEEINKATSPP-------------YYGRGPIQLTGQSNYQAAGNAL--GLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPS 196          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.311e-47
Identity = 96/182 (52.75%), Postives = 119/182 (65.38%), Query Frame = 2
Query:  158 GTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            GT    +G I++ ++F+ +L  RND RC A  FYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   +P G YA GYCF+ E                 YYGRGPIQLT   NY   G+ +   ++L+NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VIT  W PS
Sbjct:   20 GTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTL-SPDGPYAGGYCFLRE----------GNQMGNGYYGRGPIQLTGQSNYDLAGKAI--EQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPS 188          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.647e-47
Identity = 87/188 (46.28%), Postives = 123/188 (65.43%), Query Frame = 2
Query:  152 GHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL---NYPC-RGK-YYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKP 700
            G+      +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    R RE+AAF AQ  HETTGGW  AP G YAWG C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY   G+ L  G + L NP+++A    ++F++A+WFWMT +  KPSCH+V+  E++P
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQAL--GFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRP 226          
BLAST of FC875568 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.258e-46
Identity = 92/176 (52.27%), Postives = 116/176 (65.91%), Query Frame = 2
Query:  176 LGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCGEDLGPGEELLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPS 703
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FP FG +G++T R +EIAAFF QT HETTGG   A    +  GYCF+ +                +YYGRGPIQLT   NY + G  +  G+EL+NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VI   W PS
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQNDQSD-----------RYYGRGPIQLTNRNNYEKAGTAI--GQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPS 187          
The following BLAST results are available for this feature:
BLAST of FC875568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI11_ORYSJ1.135e-5557.95Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC3.652e-5454.40Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIA_SOLCI8.135e-5453.85Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI12_ORYSJ1.534e-5252.38Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR4.178e-5051.70Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIB_SOLLC7.127e-5053.30Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ1.486e-4750.25Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY3.311e-4752.75Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI10_ORYSJ5.647e-4746.28Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIQ_TOBAC1.258e-4652.27Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC31405D04EF CTVClemen1 Citrus clementina cDNA clone C31405D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875568 ID=FC875568; Name=FC875568; organism=Citrus clementina; type=EST; length=703bp
GACCCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAATGAGGC
TTATTGCGTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGA
GGCTCAGCACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATAC
CGGCCACGGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGA
TGTTTGAAGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGA
GGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGC
CTTTGGTAACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCT
TTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCT
GGTGGAGAATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCC
GTCCCCCTACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCC
GAGGTCCAATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAA
GACCTAGGGCCAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTAC
TGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACCGCAC
AGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCA
TCA
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