FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: FEM2_CAEEL (Ca(2+)/calmodulin-dependent protein kinase phosphatase OS=Caenorhabditis elegans GN=fem-2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 56/193 (29.02%), Postives = 96/193 (49.74%), Query Frame = 3 
Query:  111 VCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRD------DGSTASTAILVGNH--LYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVAL 662
            + +  VFDGHGG   ++Y   HL+E  L+  +   D   ++ +  +++ ++ L+ ER T R        GSTA    +  +   + +A +GDS   +    +   L+  H P+   E +R+E AGG + +  G  RV GVL ++RA G+   +  +  EPE   + ++    L++LA DG+ DV    D   L
Sbjct:  195 ISVLAVFDGHGGHECSQYAAGHLWETWLEVRK-SRDPSDSLEDQLRKS-LELLD-ERMTVRSVKECWKGGSTAVCCAIDMDQKLMALAWLGDSPGYVMSNIEFRQLTRGHSPSDEREARRVEEAGGQLFVIGGELRVNGVLNLTRALGDVPGRPMISNEPETCQVPIESSDYLVLLACDGISDVFNERDLYQL 384
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
FEM2_CAEEL5.874e-1129.02Ca(2+)/calmodulin-dependent protein kinase phospha... [more]

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Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
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