FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C25_ARATH (Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.136e-38
Identity = 93/219 (42.47%), Postives = 131/219 (59.82%), Query Frame = 3
Query:   30 GYSSF--RGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKL---AISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV-MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            GYS +  RG+R  MED +   T+    +   +FGV+DGHGG +AAE+  ++L +N+++      D      A+   Y  TD  FL+ E       GS   TA++   +L V+N GD R V+S  G A  LS DH+P+R DERKRIE  GG V  + G WR+ G LA+SR  G+  LK++V+AEPE +   ++   E L+LASDGLWD V N++AV +AR
Sbjct:  139 GYSVYCKRGRREAMEDRFSAITNLHGDRKQAIFGVYDGHGGVKAAEFAAKNLDKNIVEEVVGKRDESEIAEAVKHGYLATDASFLKEEDVK---GGSCCVTALVNEGNLVVSNAGDCRAVMSVGGVAKALSSDHRPSRDDERKRIETTGGYVDTFHGVWRIQGSLAVSRGIGDAQLKKWVIAEPETKISRIEHDHEFLILASDGLWDKVSNQEAVDIAR 354          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.530e-38
Identity = 95/217 (43.78%), Postives = 133/217 (61.29%), Query Frame = 3
Query:   30 GYSSFRGKRA-TMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV--MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            GY   +GK    MED+   +   VDG  + +F +FDGH G   A+YL+ +LF+N+LK   F TDTK AI   Y  TD   LE      +  GSTA T IL+ G  L +ANVGDSR V+SK G A  LS DH+P++  E+K IE+ GG V  +     RV G LA++RAFG++ LK  + ++P+I+D  +D   E ++ ASDG+W V+ N++AV L +
Sbjct:   33 GYDFVKGKAGHPMEDYVVSEFKKVDGHDLGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWTDTKNAIRNAYISTDAVILEQSLKLGKG-GSTAVTGILIDGKTLVIANVGDSRAVMSKNGVASQLSVDHEPSK--EQKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSDPDIRDENIDHETEFILFASDGVWKVMSNQEAVDLIK 246          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1L_HUMAN (Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.305e-38
Identity = 95/218 (43.58%), Postives = 129/218 (59.17%), Query Frame = 3
Query:   39 SFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQ--------QTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI-SKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF--VVAEPEIQDLEVDE-GFELLVLASDGLWDVVPNEDAV 656
            S +G+R  MED +++ T   +     +FG+FDGHGG  AAEY+K  L E L +H Q     K     +YQ          D + LE    +Y + G+T   A+L    L VANVGDSR V+  K G AIPLS DHKP +  ERKRI+ AGG + + G+WRV G+LAMSR+ G+  LK    V+ +P+I   ++D+   E ++LASDGLWD   NE+AV
Sbjct:   97 SIQGRRDHMEDRFEVLTDLANKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQHLQDYEKDKENSVLSYQTILEQQILSIDREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAV 314          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C02_ARATH (Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.316e-38
Identity = 92/219 (42.01%), Postives = 131/219 (59.82%), Query Frame = 3
Query:   30 GYSSF--RGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKH---PQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV-MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            GYS +  RGKR  MED +   T+        +FGV+DGHGG  AAE+  ++L  N+L      +  +  + A+   Y  TD +FL+ +       GS   TA++   +L VAN GD R V+S  G A  L+ DH+P+R DER RIE++GG V  +   WR+ G LA+SR  G+  LKQ++++EPEI  L ++   E L+LASDGLWD V N++AV +AR
Sbjct:  122 GYSVYCKRGKREAMEDRFSAITNLQGDPKQAIFGVYDGHGGPTAAEFAAKNLCSNILGEIVGGRNESKIEEAVKRGYLATDSEFLKEKNVK---GGSCCVTALISDGNLVVANAGDCRAVLSVGGFAEALTSDHRPSRDDERNRIESSGGYVDTFNSVWRIQGSLAVSRGIGDAHLKQWIISEPEINILRINPQHEFLILASDGLWDKVSNQEAVDIAR 337          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.637e-38
Identity = 97/228 (42.54%), Postives = 137/228 (60.09%), Query Frame = 3
Query:    3 KSEDGKLRCGYSSFRGKRAT---MEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV--MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            K   G+++  Y  +  +  T   MED++  + +   G  + +F +FDGH G     YL+++LF N+L   +F+T    AI + Y++TD   L    D  +  GSTA TAIL+ G  L+VANVGDSR V+ K G+ I +S DH PN   ER  IEN GG V  M     RV G LA+SRAFG+R LK  + +EP+I+  ++D   ELLVLASDGLW V+ N++ V +A+
Sbjct:   26 KGIQGQVKVSYGFYLVRGMTNHPMEDYHVAELAEEKGNELGLFAIFDGHLGDTVPAYLQKNLFANILNEEEFLTQPDRAIIKAYEKTDQAILSHTPDLGQG-GSTAVTAILLNGRKLWVANVGDSRAVLLKGGRPIQMSTDHDPN--VERSAIENRGGFVSNMPGDVPRVCGQLAVSRAFGDRNLKSLLKSEPDIKVEDIDYTAELLVLASDGLWKVMNNQEVVDVAK 250          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1L_BOVIN (Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.640e-37
Identity = 94/218 (43.12%), Postives = 128/218 (58.72%), Query Frame = 3
Query:   39 SFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQ--------QTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI-SKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF--VVAEPEIQDLEVDE-GFELLVLASDGLWDVVPNEDAV 656
            S +G+R  MED +++     +     +FG+FDGHGG  AAEY+K  L E L +H Q     K     +YQ          D + LE    +Y + G+T   A+L    L VANVGDSR V+  K G AIPLS DHKP +  ERKRI+ AGG + + G+WRV G+LAMSR+ G+  LK    V+ +P+I   ++D+   E ++LASDGLWD   NE+AV
Sbjct:   97 SIQGRRDHMEDRFEVLMDLANKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQHLQDYEKDKENSVLSYQTILEQQILSIDREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAV 314          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C30_ARATH (Probable protein phosphatase 2C 30 OS=Arabidopsis thaliana GN=PP2C5 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.654e-37
Identity = 94/218 (43.12%), Postives = 125/218 (57.34%), Query Frame = 3
Query:   45 RGKRATMEDFYDIKTSNVD--GQAVCMFGVFDGHGGSRAAEYLKEHLFENL------LKHPQFMTDTKLAISETYQQTDVDFL-ESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWA-GTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            RG+R  MED Y       D  G     FGVFDGHGGS+AAE+   +L  N+       +  +     + AI E Y +TD DFL E  R      G+   TA++    L V+N GD R V+S+ G A  L+ DH P++ +E KRIE  GG V    G WR+ G LA+SR  G+R LK++V+AEPE + L +   FE L+LASDGLWD V N++AV + R
Sbjct:  135 RGRRGPMEDRYFAAVDRNDDGGYKNAFFGVFDGHGGSKAAEFAAMNLGNNIEAAMASARSGEDGCSMESAIREGYIKTDEDFLKEGSRG-----GACCVTALISKGELAVSNAGDCRAVMSRGGTAEALTSDHNPSQANELKRIEALGGYVDCCNGVWRIQGTLAVSRGIGDRYLKEWVIAEPETRTLRIKPEFEFLILASDGLWDKVTNQEAVDVVR 347          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.063e-36
Identity = 89/226 (39.38%), Postives = 133/226 (58.85%), Query Frame = 3
Query:    3 KSEDGKLRCGYSSFRGKRA-TMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMW--AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            K    K+  G+    GK    MED++  +        + +F +FDGH G     YLK +LF N+LK P F T+ + AI   Y+ T+   LE+ +      GSTA TAI+V G  ++VANVGDSR V+ + G A  L+ DH+P+  +ER+RIE  GG V        RV G LA++RAFG++ LK  + +EP+++ + ++   E ++LASDGLW V+ N++AV L +
Sbjct:   63 KQSSNKVTHGFHLVEGKSGHDMEDYHVAEYKYDKSHELGLFAIFDGHLGDSVPSYLKANLFCNILKEPIFWTNPQEAIKNAYRSTNKYILENAKQL-GPGGSTAVTAIVVDGKDMWVANVGDSRAVVCERGAANQLTVDHEPHTTNERQRIEKQGGFVTTFPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVK 287          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.389e-36
Identity = 90/213 (42.25%), Postives = 132/213 (61.97%), Query Frame = 3
Query:   30 GYSSFRGKRA-TMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV--MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            G+   +GK +  MED+   +   ++G  + +F +FDGH G   A+YL+ +LF+N+LK   F TDT+ AI   Y+ TD   L+      +  GSTA T IL+ G  L VANVGDSR V+SK G A  LS DH+P++  E+K IE+ GG V  +     RV G LA++RAFG++ LK  + +EP+I    +D+  E ++ ASDG+W V+ N++AV
Sbjct:   37 GFHCVKGKSSHPMEDYVVSEFKKLEGHELGLFAIFDGHLGHDVAKYLQTNLFDNILKEKDFWTDTENAIRNAYRSTDAVILQQSLKLGKG-GSTAVTGILIDGKKLVVANVGDSRAVMSKNGVAHQLSVDHEPSK--EKKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKLHLSSEPDITHQTIDDHTEFILFASDGIWKVLSNQEAV 246          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C39_ARATH (Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.389e-36
Identity = 94/213 (44.13%), Postives = 124/213 (58.22%), Query Frame = 3
Query:   30 GYSSFRGKRA-TMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVG-NHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVV--MWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            G+   +GK    MED+   K   VD   + +F +FDGH      +YL  HLFEN+LK P F  + + AI + Y  TD   L+ + D     GSTA TAIL+    L VANVGDSR VI + G A PLS DH+PN   E+  IEN GG V        RV G LA++RAFG++ LK  + +EP +    +D+  E L+LASDGLW V+ N++AV
Sbjct:   43 GFHLVKGKAFHEMEDYVVAKFKEVDDNELGLFAIFDGHLSHEIPDYLCSHLFENILKEPNFWQEPEKAIKKAYYITDTTILD-KADDLGKGGSTAVTAILINCQKLVVANVGDSRAVICQNGVAKPLSVDHEPNM--EKDEIENRGGFVSNFPGDVPRVDGQLAVARAFGDKSLKMHLSSEPYVTVEIIDDDAEFLILASDGLWKVMSNQEAV 252          
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
P2C25_ARATH1.136e-3842.47Probable protein phosphatase 2C 25 OS=Arabidopsis ... [more]
P2C20_ARATH2.530e-3843.78Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
PPM1L_HUMAN3.305e-3843.58Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE... [more]
P2C02_ARATH4.316e-3842.01Probable protein phosphatase 2C 2 OS=Arabidopsis t... [more]
P2C41_ORYSJ5.637e-3842.54Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
PPM1L_BOVIN1.640e-3743.12Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2... [more]
P2C30_ARATH3.654e-3743.12Probable protein phosphatase 2C 30 OS=Arabidopsis ... [more]
P2C44_ORYSJ1.063e-3639.38Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C58_ARATH1.389e-3642.25Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]
P2C39_ARATH1.389e-3644.13Probable protein phosphatase 2C 39 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
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