FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C28_ARATH (Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.030e-31
Identity = 79/200 (39.50%), Postives = 118/200 (59.00%), Query Frame = 3
Query:   63 MEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILV-GNHLYVANVGDSRTVISKAGKAI-PLSEDHKPNRCDERKRIENAGGVVMW--AGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 650
            MEDF    T  V G  + ++ +FDGH GS  A+YL+ HLF+N+L  P F  + K AI   Y+ TD   L++        GSTA TAI++ G  + VANVGDSR ++ +    +  ++ DH+P++  ER  +++ GG V        RV G LAM+RAFG+  LK+ +   P I+  E+ +  + L+LASDGLW V+ N++
Sbjct:    1 MEDFIVADTKTVKGHNLGLYAIFDGHSGSDVADYLQNHLFDNILSQPDFWRNPKKAIKRAYKSTDDYILQNV--VGPRGGSTAVTAIVIDGKKIVVANVGDSRAILCRESDVVKQITVDHEPDK--ERDLVKSKGGFVSQKPGNVPRVDGQLAMTRAFGDGGLKEHISVIPNIEIAEIHDDTKFLILASDGLWKVMSNDE 196          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C08_ORYSJ (Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.030e-31
Identity = 95/251 (37.85%), Postives = 133/251 (52.99%), Query Frame = 3
Query:   30 GYSSFRGKRATMEDFYDI--------KTSNVDGQAVC----------MFGVFDGHGGSRAAEYLKEHLFENLLK-----------------HPQFMTDTKLAISETYQQTDVDFLESER-DTYRDD-GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            G  S  G+R  MED   +        K + V+G  V            F V+DGHGGSR AE  +E +   L +                   +     K A++  + + D +   +E  DT     GSTA  A++    + VAN GDSR V+S+ G A+PLS DHKP+R DE +R+E AGG V+ W G +R+ GVLA SR+ G+  LK +V+AEPE+  ++  +  E L+LASDGLWDVV N+ A  +AR
Sbjct:   92 GAVSVIGRRREMEDAIFVAAPFLAASKEAAVEGSGVAEEEGKEEDEGFFAVYDGHGGSRVAEACRERMHVVLAEEVRVRRLLQGGGGGADVEDEDRARWKEAMAACFTRVDGEVGGAEEADTGEQTVGSTAVVAVVGPRRIVVANCGDSRAVLSRGGVAVPLSSDHKPDRPDEMERVEAAGGRVINWNG-YRILGVLATSRSIGDYYLKPYVIAEPEVTVMDRTDKDEFLILASDGLWDVVSNDVACKIAR 341          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.345e-31
Identity = 81/224 (36.16%), Postives = 125/224 (55.80%), Query Frame = 3
Query:   24 RCGYSSFRGKRATMEDFY---DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF------VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            R G  S +G + +MED +   D  T  +       +GVFDGHGG  AA + K+++ + +++   F T TK A    + +TD   L       R  G+TA TA+++   + +AN GDSR V+ K G+AI LS+DHKPN   ER RIE  GGV+       + G L+++RA G+  +K        +  EPE++++ + E  E L++  DGLWDV+ ++ AV + R
Sbjct:   72 RSGSWSDKGPKQSMEDEFICVDDLTEYIGSSTGAFYGVFDGHGGVDAASFTKKNIMKLVMEDKHFPTSTKKATRSAFVKTD-HALADASSLDRSSGTTALTALILDKTMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIY---DGYLNGQLSVARALGDWHIKGTKGSLCPLSCEPELEEIVLTEEDEYLIMGCDGLWDVMSSQCAVTMVR 291          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C30_ORYSJ (Probable protein phosphatase 2C 30 OS=Oryza sativa subsp. japonica GN=Os03g0268600 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.345e-31
Identity = 92/243 (37.86%), Postives = 128/243 (52.67%), Query Frame = 3
Query:   18 KLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT---------KLAISETYQQTDVDFLESERDTYRDD---------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEG-FELLVLASDGLWDVVPNEDAVALAR 668
            + R G++S  G+R  MED        + G     FGVFDGHG S  A    + + E ++        +         +  +  ++ + D + + S R +                   GSTA  A+L   H+ VAN GDSR V+ + G AIPLS DHKP+R DE +RI  AGG V+ W G  RV G+LAMSRA G+  LK +V+ +PE++ +E  +G  E L+LASDGLWDVV NE A  + R
Sbjct:   75 RARYGFTSVCGRRRDMEDSVSACPGFLPGHH--FFGVFDGHGCSHVATSCGQRMHEIVVDEAGAAAGSAGLDEEARWRGVMERSFARMDAEAVASSRGSVAPAPTCRCEMQLPKCDHVGSTAVVAVLGPRHVVVANCGDSRAVLCRGGAAIPLSCDHKPDRPDELERIHAAGGRVIFWDGA-RVFGMLAMSRAIGDSYLKPYVICDPEVRVMERKDGEDEFLILASDGLWDVVSNEVACNVVR 314          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1F_RAT (Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 71/181 (39.23%), Postives = 101/181 (55.80%), Query Frame = 3
Query:  120 FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVAL 662
            F VFDGHGG  AA Y   H+  N    P+ +TD   A+ E ++ TD  FL+  +      G+T   A++ G  L+VA +GDS+ ++ + G+ + L E HKP R DE+ RIE  GG V     WRV G LA+SRA G+   K +V  E +    E+    + L+LA DG +DVVP+ +   L
Sbjct:  190 FAVFDGHGGVDAARYASVHVHTNASHQPELLTDPAAALKEAFRHTDQMFLQKAKRERLQSGTTGVCALITGAALHVAWLGDSQVILVQQGQVVKLMEPHKPERQDEKSRIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGLEDYLLLACDGFFDVVPHHEIPGL 370          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1F_HUMAN (Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 70/183 (38.25%), Postives = 104/183 (56.83%), Query Frame = 3
Query:  120 FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            F VFDGHGG  AA Y   H+  N  + P+  TD + A+ E +++TD  FL   +      G+T   A++ G  L+VA +GDS+ ++ + G+ + L E H+P R DE+ RIE  GG V     WRV G LA+SRA G+   K +V  E +     +    + L+LA DG +DVVP+++ V L +
Sbjct:  194 FAVFDGHGGVDAARYAAVHVHTNAARQPELPTDPEGALREAFRRTDQMFLRKAKRERLQSGTTGVCALIAGATLHVAWLGDSQVILVQQGQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQ 376          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C04_ORYSJ (Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.294e-31
Identity = 83/218 (38.07%), Postives = 125/218 (57.34%), Query Frame = 3
Query:   48 GKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLE-------SERDTYRD--DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMW-AGTWRVG-GVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            G+R TMED + +     + + +  FG+FDGH GS AAE+         LK     T    A++E + +TD+ F E       S+R T ++   G TA TA++V N L+VAN GD R ++++AG+  P++ DH  +   ER+RI   G  V W   TWRVG   L ++R+ G+  LK  V A+PE+ +  +    E LV+ASDGLWDV+ NED +++ +
Sbjct:  398 GRRETMEDTHFMLPHMSEEKDLHAFGIFDGHRGSAAAEF-SVRAVPGFLKQFNSNTSPTDALTEAFVRTDIAFREELILHQKSKRITQKNWHPGCTAVTALIVRNKLFVANAGDCRAILNRAGEPFPMTRDHVASCPKERERIVKEGTEVKWQIDTWRVGAAALQVTRSIGDDDLKPAVTAQPEVIETILSPDDEFLVMASDGLWDVMSNEDVLSIIK 614          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.110e-31
Identity = 70/181 (38.67%), Postives = 100/181 (55.25%), Query Frame = 3
Query:  120 FGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVAL 662
            F VFDGHGG  AA Y   H+  N    P+  T+   A+ E ++ TD  FL+  +      G+T   A++ G  L+VA +GDS+ ++ + G+ + L E HKP R DE+ RIE  GG V     WRV G LA+SRA G+   K +V  E +    E+    + L+LA DG +DVVP+ +   L
Sbjct:  191 FAVFDGHGGVDAARYASVHVHTNASHQPELRTNPAAALKEAFRLTDEMFLQKAKRERLQSGTTGVCALIAGAALHVAWLGDSQVILVQQGRVVKLMEPHKPERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDYLLLACDGFFDVVPHHEVTGL 371          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C09_ORYSJ (Probable protein phosphatase 2C 9 OS=Oryza sativa subsp. japonica GN=Os01g0846300 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.110e-31
Identity = 93/238 (39.08%), Postives = 128/238 (53.78%), Query Frame = 3
Query:   24 RCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMF-GVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLA-----ISETYQQTDVDF---------------LESERDTYRDD-GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGG-VVMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            R G ++  G+R  MED   I+   +       F GVFDGHG S  A   ++ + E + +        ++A     + +++ + D +                 E +  + RD  GSTA  A++    + VAN GDSR VIS+AG  + LS DHKP+R DE +RIE AGG V+ W G  RV GVLAMSRA G+  LK +V +EPE+   E  +  E L+LASDGLWDVV NE A  + R
Sbjct:   99 RYGVTAVCGRRREMEDAVSIRPDFLPASGKFHFYGVFDGHGCSHVATTCQDRMHEIVAEEHNKGASGEVAPWRDVMEKSFARMDGEVGNRASTRSDDEPACPCEQQTPSRRDHAGSTAVVAVVSPTQVVVANAGDSRAVISRAGVPVALSVDHKPDRPDELERIEAAGGRVIYWDGA-RVLGVLAMSRAIGDGYLKPYVTSEPEVTVTERTDDDECLILASDGLWDVVTNEMACEVVR 335          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.675e-31
Identity = 85/235 (36.17%), Postives = 123/235 (52.34%), Query Frame = 3
Query:   24 RCGYSSFRGKRATMEDFY--------DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLES-ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF-----------VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            R G  S  G R++MED Y             N +      +GVFDGHGG  AAE+   H+   +++  +F ++    +S  + QTD  FLE+   D     G+TA  AIL G  L VAN GD R V+S+ GKAI +S DHKP    ER+RIE +GG V       + G L ++RA G+  ++             ++AEPE+   ++ E  E L++  DG+WDV  +++AV  AR
Sbjct:   89 RSGAWSDIGSRSSMEDAYLCVDNFMDSFGLLNSEAGPSAFYGVFDGHGGKHAAEFACHHIPRYIVEDQEFPSEINKVLSSAFLQTDTAFLEACSLDGSLASGTTALAAILFGRSLVVANAGDCRAVLSRQGKAIEMSRDHKPMSSKERRRIEASGGHVF---DGYLNGQLNVARALGDFHMEGMKKKKDGSDCGPLIAEPELMTTKLTEEDEFLIIGCDGVWDVFMSQNAVDFAR 320          
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
P2C28_ARATH1.030e-3139.50Probable protein phosphatase 2C 28 OS=Arabidopsis ... [more]
P2C08_ORYSJ1.030e-3137.85Probable protein phosphatase 2C 8 OS=Oryza sativa ... [more]
P2C47_ARATH1.345e-3136.16Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]
P2C30_ORYSJ1.345e-3137.86Probable protein phosphatase 2C 30 OS=Oryza sativa... [more]
PPM1F_RAT2.294e-3139.23Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm... [more]
PPM1F_HUMAN2.294e-3138.25Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE... [more]
P2C04_ORYSJ2.294e-3138.07Protein kinase and PP2C-like domain-containing pro... [more]
PPM1F_MOUSE5.110e-3138.67Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
P2C09_ORYSJ5.110e-3139.08Probable protein phosphatase 2C 9 OS=Oryza sativa ... [more]
P2C22_ARATH6.675e-3136.17Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
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