FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.222e-26
Identity = 78/223 (34.98%), Postives = 111/223 (49.78%), Query Frame = 3
Query:   30 GYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            G S  +G R  MED +    S  D      F V+DGHGGS+ ++Y   +L + ++   +F   + K AI + + + D      E       G+TA   ++    +Y  N GDSR V S  G+A PLS DHKP+   E +RI  AGG   W    RV G LA+SRA G+   K         Q V A P++   ++    E +VLA DG+WDV+ N++ V   R
Sbjct:   25 GSSCMQGWRVDMEDAHTHLLSLPDDPKCAFFAVYDGHGGSKVSQYSGINLHKKVVAQKEFSEGNMKEAIEKGFLELDQQMRVDEETKDDVSGTTAVVVLIKEGDVYCGNAGDSRAVSSVVGEARPLSFDHKPSHETEARRIIAAGG---WVEFNRVNGNLALSRALGDFAFKNCDTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVR 244          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.902e-26
Identity = 82/235 (34.89%), Postives = 115/235 (48.94%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTK------LAISETYQQTDVDFLESE---------RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 650
            LR G SS +G R  MED +        G +    F V+DGH GSR A Y   HL E++  +  F    K      L++          FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ + G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ ++   E  E ++LA DG+WDV+ NE+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEE 253          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C47_ORYSJ (Probable protein phosphatase 2C 47 OS=Oryza sativa subsp. japonica GN=Os05g0134200 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 79/241 (32.78%), Postives = 129/241 (53.53%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFY---DIKTSNVDGQAVC-----MFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVD-----FLESER------DTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            +R G  +  G R  MED +   D  ++++    VC      +GVFDGHGG  AA Y+K H    L +  +F   ++  + ETY Q+  +     FL+++       D  R  G+TA TA++ G  L VAN GD R V+ + G A+ +S DH+ N  +E +R+  +GG +       + GVL+++RA G+  +K        ++AEPE +   + E  E L++  DG+WDV+ ++ AV++ R
Sbjct:   75 IRSGSFADIGPRRYMEDEHIRIDDLSAHLGSLLVCPLPSAFYGVFDGHGGLDAAAYMKRHAMRFLFEDSEFPQASQ--VDETYVQSVENSVRRAFLQADLALADDLDISRSSGTTALTALVFGRQLLVANAGDCRAVLCRRGVAMEMSRDHRANYAEECERVAASGGYI---EDGYLNGVLSVTRALGDWDMKMPDGSISPLIAEPEFRQTMLTEDDEFLIMGCDGIWDVMTSQHAVSIVR 310          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C08_ARATH (Probable protein phosphatase 2C 8 OS=Arabidopsis thaliana GN=At1g18030 PE=2 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.790e-26
Identity = 81/233 (34.76%), Postives = 125/233 (53.65%), Query Frame = 3
Query:   45 RGKRATMEDFYDI---KTSNVDGQAVCM-FGVFDGHGGSRAAEYLKEHLFENLLKH--PQFMTDTKL---AISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAG---------------KAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF-VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            +G R TMED + +    + +  G   C  F ++DGHGG  AAE+ K+HL  N+L    P+ + D K+   AI E +++TD   L+        DG+TA    ++   ++VAN+GD++ V++++                KAI L+ +HK     ER RI+ +GGV+   G  R+ G L +SRAFG+R  K+F V A P+I   E+ E    ++L  DGLW+V    DAV   +
Sbjct:   81 KGARHTMEDVWVVLPDASLDFPGTLRCAHFAIYDGHGGRLAAEFAKKHLHLNVLSAGLPRELLDVKVAKKAILEGFRKTDELLLQKSVSGGWQDGATAVCVWILDQKVFVANIGDAKAVLARSSTTNELGNHTEAGNPLKAIVLTREHKAIYPQERSRIQKSGGVISSNG--RLQGRLEVSRAFGDRHFKKFGVSATPDIHAFELTERENFMILGCDGLWEVFGPSDAVGFVQ 311          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1B_BOVIN (Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 81/235 (34.47%), Postives = 115/235 (48.94%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKL------AISETYQQTDVDFLESE---------RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 650
            LR G SS +G R  MED +        G +    F V+DGH GSR A Y   HL E++  +  F    K       ++          FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ ++G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ ++   E  E ++LA DG+WDV+ NE+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITNNEDFRAAGKSGSALEPSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLYRSGQVCFSTQDHKPCNPREKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEE 253          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1A_BOVIN (Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 83/237 (35.02%), Postives = 121/237 (51.05%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLWDVVPNEDAVALAR 668
            LR G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP+   E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ D+E  +E  + ++LA DG+WDV+ NE+     R
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVYFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.950e-26
Identity = 75/224 (33.48%), Postives = 118/224 (52.68%), Query Frame = 3
Query:   48 GKRATMEDFY--------DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLES-ERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF--------VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            G R TMED +        +    + +      +GVFDGHGG  AA+++  +L   +++   F  + + A+S  + QTD  F ++   ++    G+TA  A++VG  L VAN GD R V+   GKAI +S DHKP+   E+ RIE +GG V       + G L ++RA G+  ++          + AEPE+    + E  E L++  DG+WDV  +++AV  AR
Sbjct:   75 GSRHTMEDVFICSDNLMKEFGVESFEDGPSAFYGVFDGHGGKHAADFVCSNLARFIVEDEDFPREIEKALSSAFLQTDAAFADACSVNSSLASGTTALAALVVGRSLLVANAGDCRAVLCCRGKAIEMSRDHKPSCNREKVRIEASGGYVY---DGYLNGQLNVARAIGDWHMEGMKACDGLGPLSAEPEVMIRNLTEEDEFLIIGCDGIWDVFRSQNAVDFAR 295          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26
Identity = 83/237 (35.02%), Postives = 122/237 (51.48%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLWDVVPNEDAVALAR 668
            LR G SS +G R  MED +        G ++   F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP+   E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ D+E  +E  + ++LA DG+WDV+ NE+     R
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1A_RAT (Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.443e-26
Identity = 83/237 (35.02%), Postives = 121/237 (51.05%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLWDVVPNEDAVALAR 668
            LR G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP+   E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ D+E  +E  + ++LA DG+WDV+ NE+     R
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.443e-26
Identity = 83/237 (35.02%), Postives = 121/237 (51.05%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLWDVVPNEDAVALAR 668
            LR G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP+   E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ D+E  +E  + ++LA DG+WDV+ NE+     R
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
PP2C2_CAEEL2.222e-2634.98Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]
PPM1B_HUMAN2.902e-2634.89Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
P2C47_ORYSJ3.790e-2632.78Probable protein phosphatase 2C 47 OS=Oryza sativa... [more]
P2C08_ARATH3.790e-2634.76Probable protein phosphatase 2C 8 OS=Arabidopsis t... [more]
PPM1B_BOVIN4.950e-2634.47Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2... [more]
PPM1A_BOVIN4.950e-2635.02Protein phosphatase 1A OS=Bos taurus GN=PPM1A PE=2... [more]
P2C57_ORYSJ4.950e-2633.48Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]
PPM1A_HUMAN6.465e-2635.02Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]
PPM1A_RAT8.443e-2635.02Protein phosphatase 1A OS=Rattus norvegicus GN=Ppm... [more]
PPM1A_RABIT8.443e-2635.02Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
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