FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.443e-26
Identity = 83/237 (35.02%), Postives = 121/237 (51.05%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQQTDVDF-LESERDTYRD-DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLE-VDEGFELLVLASDGLWDVVPNEDAVALAR 668
            LR G SS +G R  MED +        G +    F V+DGH GS+ A+Y  EHL +++  +  F        + + K  I   + + D    + SE+    D  GSTA   ++   H Y  N GDSR ++ +  K    ++DHKP+   E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ D+E  +E  + ++LA DG+WDV+ NE+     R
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVIGLPSGLETWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFRGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM---IQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVR 255          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1B_RAT (Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.103e-25
Identity = 83/235 (35.32%), Postives = 116/235 (49.36%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTK--LAISETYQQTDVD----FLESE---------RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 650
            LR G SS +G R  MED +        G +    F V+DGH GSR A Y   HL E++  +  F    K   A+  + +         FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ + G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ ++   E  E +VLA DG+WDV+ NE+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAADKSGFALEPSVENVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPTHIYFINCGDSRAVLCRNGQVCFSTQDHKPCNPMEKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFVVLACDGIWDVMSNEE 253          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C4_PARTE (Probable protein phosphatase 2C 4 OS=Paramecium tetraurelia GN=GSPATT00020181001 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.440e-25
Identity = 80/227 (35.24%), Postives = 128/227 (56.39%), Query Frame = 3
Query:   36 SSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKL--AISETYQQTDVDFL--ESERDTYR----DD-----GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------RMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 650
            S  +G R TMED + I   ++  Q + +FGVFDGHGG   A+++++H  E L K+  F  D K   A+ ET+ + D   L  E +++  +    DD     G TA+ A+   N LYVAN GDSR+V+ +      +S DHKP+  +E+ RIE AGG V      RV G L +SRA G+         R  +Q ++A P+I+ +E+++  + L++  DG+++ + ++D
Sbjct:   27 SEMQGWRNTMEDAH-IHVCDLQ-QDLSIFGVFDGHGGKEVAQFVEKHFIEELQKNKNFK-DQKFEDALRETFLKMDELLLTPEGQKEIIQIKGGDDEASYAGCTANVALFHKNVLYVANAGDSRSVLCRNNTNYDMSVDHKPDNYEEKSRIERAGGFV---SDGRVNGNLNLSRALGDLEYKRDSKLRSNEQLIIALPDIKKVELNQTDKFLLMGCDGVFETLDHQD 247          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPM1B_MOUSE (Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.457e-25
Identity = 82/235 (34.89%), Postives = 113/235 (48.09%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG-QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKL------AISETYQQTDVDFLESE---------RDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 650
            LR G SS +G R  MED +        G      F V+DGH GSR A Y   HL E++  +  F    K       ++          FL+ +         R+     GSTA   ++   H+Y  N GDSR V+ + G+    ++DHKP    E++RI+NAGG VM     RV G LA+SRA G+   K         Q V  EPE+ ++   E  E +VLA DG+WDV+ NE+
Sbjct:   22 LRYGLSSMQGWRVEMEDAHTAVVGIPHGLDNWSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAADKSGSALEPSVESVKTGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMVSPTHMYFINCGDSRAVLCRNGQVCFSTQDHKPCNPVEKERIQNAGGSVM---IQRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEIVRAEEDEFVVLACDGIWDVMSNEE 253          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 115.161 bits (287), Expect = 3.208e-25
Identity = 82/256 (32.03%), Postives = 125/256 (48.83%), Query Frame = 3
Query:   36 SSFRGKRATMEDFYDIKTSNVDGQA-VCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESE----------------RDTYRD------------------DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWA-GTWRVGGVLAMSRAFGN---------RMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            S+ +G R+TMED +     N+D       FGV+DGHGGS  A Y   HL   +L+   F ++   A+ +++ + D + L ++                R   R                   +G TA   ++    + V N GD+R VIS+ G+AI LS DHKPN  +E +RI  AGG V ++ G+ RV   +A+SRA G+         R  +Q +   PEI+  ++ +  E LV+A DG+WDV+ N+  V   R
Sbjct:   30 SAMQGYRSTMEDAH-ATIENLDALTNTSFFGVYDGHGGSAVARYCANHLHNKVLEQEDFSSNLANALRQSFFRMD-EMLRNQAASKELTEYGSGNEYWRTAGRSWLRCAPCVLGPVYCGPLAEGCTACVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSRGSHRVNNGIAVSRAIGDLSYKNNKKLRPEQQLLTCSPEIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVR 283          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C21_ORYSJ (Probable protein phosphatase 2C 21 OS=Oryza sativa subsp. japonica GN=Os02g0606900 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.190e-25
Identity = 89/260 (34.23%), Postives = 127/260 (48.85%), Query Frame = 3
Query:    6 SEDGKLRCGYSSF--RGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDTKLAISETYQQTDVDFLESE--RDTYRD--------------------------DGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFG------NRML---KQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            SE    R  Y+S+  +G R  MED   ++  ++D      FGV+DGHGG+  A Y  +     LL+   ++ +   AI+    + D D   S   R++                             +GSTA   I+ GN + V NVGDSR V+SK G+AI LS DHKP+   ER+RI+ AGG V      R+ G+LA SRA G      NR +   +Q V   P+I+   + +  E LV+ASDG+WD + N + V   R
Sbjct:   16 SEGENHRVKYASYTTQGFRPHMEDALAVEL-DLDA-TTSFFGVYDGHGGAEVAMYCAKRFHTMLLEDVDYINNLPNAITSVCFRLDDDLQRSNEWRESLNPCANRNCLTNICANLHHFTEDYVPPSYEGSTACVVIIRGNQIIVGNVGDSRCVLSKNGQAISLSFDHKPHHEAERERIQRAGGHVF---LQRILGMLATSRAIGDFAYKQNRNMPPSQQMVTCVPDIRVENITDDTEFLVIASDGVWDGMRNNNVVQFVR 270          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C1_PARTE (Protein phosphatase 2C 1 OS=Paramecium tetraurelia GN=GSPATT00029903001 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.148e-25
Identity = 75/226 (33.19%), Postives = 123/226 (54.42%), Query Frame = 3
Query:   36 SSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT-KLAISETYQQTDVDFLESE--------RDTYRDD---GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------RMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 650
            S  +G R TMED +  +   +  Q V +FGVFDGHGG   A+++++H  + LLK+  F     + A+ ET+ + D   L  E        + T  D+   G TA+ A++  N LYVAN GDSR+V+ +      +S DHKP+  +E+ RIE AGG V      RV G L +SRA G+         R  +Q ++A P+++  E+    + +++  DG+++ + +++
Sbjct:   27 SEMQGWRNTMEDAHIHRPDII--QDVSVFGVFDGHGGREVAQFVEKHFVDELLKNKNFKEQKFEEALKETFLKMDELLLTPEGQKELNQYKATDTDESYAGCTANVALIYKNTLYVANAGDSRSVLCRNNTNHDMSVDHKPDNPEEKSRIERAGGFV---SDGRVNGNLNLSRALGDLEYKRDNKLRSNEQLIIALPDVKKTELTPQDKFILMGCDGVFETLNHQE 247          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.335e-25
Identity = 78/225 (34.67%), Postives = 122/225 (54.22%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT-KLAISETYQQTD--------VDFLESER---DTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWD 632
            L+   +  +G R TMED + I   N++   V +F VFDGHGGS  A + + H  E L+K+  +     + A++ET+ + D        +D L   R   D     G TA+ A++VG  LYVAN GDSR+ +++ GK   +S+DHKP+   E+KRIE AGG V      RV G L++SRA G+   K         Q + A P+++  ++    + L++  DG+++
Sbjct:   22 LQYAATHMQGWRNTMEDAH-ISDLNIEPD-VHLFAVFDGHGGSEVAIFAERHFREELMKNKNYQQKNYEKALTETFFKIDKMLQEPSGLDELNKIRGVTDEASLAGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDEQEKKRIERAGGFV---SDGRVNGNLSLSRALGDLEYKKDNRFKPEEQIITALPDVKVTQLSAADKFLLMGCDGVFE 241          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C3_PARTE (Probable protein phosphatase 2C 3 OS=Paramecium tetraurelia GN=GSPATT00031056001 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.335e-25
Identity = 75/226 (33.19%), Postives = 123/226 (54.42%), Query Frame = 3
Query:   36 SSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMTDT-KLAISETYQQTDVDFLESE--------RDTYRDD---GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGN---------RMLKQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNED 650
            S  +G R TMED +  +   V  Q V +FGVFDGHGG   A+++++H  + LLK+  F     + A+ ET+ + D   +  E        + T  D+   G TA+ A++  N LYVAN GDSR+V+ +      +S DHKP+  +E+ RIE AGG V      RV G L +SRA G+         R  +Q ++A P+++  E+    + +++  DG+++ + +++
Sbjct:   27 SEMQGWRNTMEDAHIHRPDIV--QDVSVFGVFDGHGGREVAQFVEKHFIDELLKNKNFKEQKFEDALKETFLKMDELLMTPEGAKELNNYKATDTDESYAGCTANVALIHKNTLYVANAGDSRSVLCRNNTNFDMSVDHKPDNNEEKSRIERAGGFV---SDGRVNGNLNLSRALGDLEYKSDSKLRPNEQLIIAFPDVKKTELTPQDKFILMGCDGVFETLNHQE 247          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C11_ORYSJ (Probable protein phosphatase 2C 11 OS=Oryza sativa subsp. japonica GN=Os02g0180000 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 92/276 (33.33%), Postives = 129/276 (46.74%), Query Frame = 3
Query:    6 SEDG---KLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDV----------------------DFLE--------SERDTYRDD----------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFG------NRML---KQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            SEDG   KL+ G SS +G RA MED +     N+D +    FGVFDGHGG   A++  ++L   +L+   +   D   A+   + + D                         +E        S+ +  +DD                G TA  A++  N L VAN GDSR VIS+AG+A  LS DHKP    ER RI  AGG +      R+ G L ++RA G      N+ L   KQ V A P+I  +E+ +  + LVLA DG+WD + ++  V
Sbjct:   14 SEDGENDKLKLGLSSMQGWRANMEDAHSALL-NLDNET-SFFGVFDGHGGRVVAKFCAKYLHSQVLRSEAYSAGDLGTAVHRAFFRMDEMMRGQRGWRELSALGDKINKIGGMIEGLIWSPRGSDSNNGQDDWSFEEGPHSDFAGPTCGCTACVALIRNNQLVVANAGDSRCVISRAGQAYNLSRDHKPELEAERDRIVKAGGFIHMG---RINGSLNLTRAIGDMEFKQNKFLPPEKQIVTANPDINVVELCDDDDFLVLACDGIWDCMSSQQLV 284          
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
PPM1A_MOUSE8.443e-2635.02Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]
PPM1B_RAT1.103e-2535.32Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm... [more]
PP2C4_PARTE1.440e-2535.24Probable protein phosphatase 2C 4 OS=Paramecium te... [more]
PPM1B_MOUSE2.457e-2534.89Protein phosphatase 1B OS=Mus musculus GN=Ppm1b PE... [more]
P2C42_ORYSJ3.208e-2532.03Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
P2C21_ORYSJ4.190e-2534.23Probable protein phosphatase 2C 21 OS=Oryza sativa... [more]
PP2C1_PARTE7.148e-2533.19Protein phosphatase 2C 1 OS=Paramecium tetraurelia... [more]
PP2C6_PARTE9.335e-2534.67Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
PP2C3_PARTE9.335e-2533.19Probable protein phosphatase 2C 3 OS=Paramecium te... [more]
P2C11_ORYSJ1.219e-2433.33Probable protein phosphatase 2C 11 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
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