FC875579

Overview
NameFC875579
Unique NameFC875579
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length670
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10268 contig Ccv1_Contig10268:1..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.592e-24
Identity = 84/230 (36.52%), Postives = 118/230 (51.30%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFYDIKTSNVDG--QAVCMFGVFDGHGGSRAAEYLKEHLFENLLKH----PQFMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVG-NHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVAL 662
            LR G S+ +G RA MED +  + + + G       F V DGHGG+RAA +   HL   +L      PQ     + A+   + Q D     S      D G + + A+LV    LY+A+ GDSR ++S++G     +EDH+P+R  ER+RI +AGG V      RV G LA+SRA G+   K         Q V AEPE+  L   +  E ++LASDG+WD +   D   L
Sbjct:   58 LRFGASAVQGWRARMEDAHCARLA-LPGLPSGWAFFAVLDGHGGARAARFGARHLPGYVLGELGPAPQEPDGVRQALRSAFLQADAQL--SALWPRGDPGGSTAVALLVSPRFLYLAHCGDSRALLSRSGSVAFCTEDHRPHRPRERERIHDAGGTVR---RRRVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWDALSGADLAGL 281          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.592e-24
Identity = 74/217 (34.10%), Postives = 117/217 (53.92%), Query Frame = 3
Query:   45 RGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQF--------MTDTKLAISETYQ----QTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVDEGFELLVLASDGLWD 632
            +G R TMED + I   N++   V +F VFDGHGGS  A + + H  E L+K+  +        +T+T   I +  Q    Q +++ +    D     G TA+ A++VG  LYVAN GDSR+ +++ GK   +S+DHKP+   E+KRIE AGG V      R  G L++SRA G+   K         Q + A P+++  ++    + L++  DG+++
Sbjct:   30 QGWRNTMEDAH-ISDMNIEPD-VHLFAVFDGHGGSEVAIFAERHFREELMKNKNYQQKNYEKALTETFFKIDKMLQEPSGQDELNKIRGVNDETSLAGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDDQEKKRIERAGGFV---SDGRANGNLSLSRALGDLEYKKDSRFKPEEQIISALPDVKVTQLTASDKFLLMGCDGVFE 241          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C02_ORYSJ (Probable protein phosphatase 2C 2 OS=Oryza sativa subsp. japonica GN=Os01g0295700 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.080e-24
Identity = 78/240 (32.50%), Postives = 119/240 (49.58%), Query Frame = 3
Query:   21 LRCGYSSFRGKRATMEDFY---DIKTSNVDGQAVC-----MFGVFDGHGGSRAAEYLKEH---LFENLLKHPQ-------FMTDTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK------QFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAVALAR 668
            +R G  +  G R  MED +   D  + ++    +C      +GVFDGHGG  AA Y+K H   LF    + PQ       F    + +I   +   D+  L  +    R  G+TA  A++ G  L VAN GD R V+ + G A+ +S DH+P    E +RI   GG +       + GVL+++RA G+  +K        ++AEPE Q   + E  E L++  DG+WDV+ ++ AV + R
Sbjct:   68 IRSGSFADIGPRRYMEDEHIRIDDLSGHLGSLLMCPAPNAFYGVFDGHGGPDAAAYMKRHAIRLFFEDSEFPQALEEDESFYESVEKSIHNAFLSADLA-LADDLAISRSSGTTALAALIFGRQLLVANAGDCRAVLCRKGVAVEMSRDHRPTYDAEHERITECGGYI---EDGYLNGVLSVTRALGDWDMKMPQGSRSPLIAEPEFQQTTLTEDDEFLIIGCDGIWDVMSSQHAVTIVR 303          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.547e-24
Identity = 93/277 (33.57%), Postives = 130/277 (46.93%), Query Frame = 3
Query:    6 SEDG---KLRCGYSSFRGKRATMEDFYDIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLK-------------HPQFMTDTKL-----------AISETYQQTDVDFLE--------SERDTYRDD----------------GSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFG------NRML---KQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            SEDG   KL+ G SS +G RATMED +     ++D      FGVFDGHGG   A++  ++L   +L+             H  F    ++           A+ +   Q     +E        S+ +   DD                GSTA  AI+  + L VAN GDSR VIS+ G+A  LS DHKP    ER+RI  AGG +      RV G + +SRA G      N+ L   KQ + A P+I  +E+ +  + LVLA DG+WD + ++  V
Sbjct:   14 SEDGENDKLKFGLSSMQGWRATMEDAHSALL-DIDNDT-SFFGVFDGHGGRVVAKFCAKYLHREVLRSEAYSAGDLGNAAHKAFFRMDEMMRGQRGWRELQALGDKINQIS-GMIEGLIWSPRGSDSNDQHDDWAFEEGPHSDFAGPTCGSTACVAIVRNSQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGGYIQMG---RVNGTINLSRAIGDIEFKQNKFLSPDKQMLTANPDINTVELCDDDDFLVLACDGIWDCMSSQQLV 284          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: P2C21_ARATH (Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.633e-24
Identity = 89/283 (31.45%), Postives = 136/283 (48.06%), Query Frame = 3
Query:    6 SEDG---KLRCGYSSFRGKRATMEDFY------DIKTSNVDGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESERD-----------------------------------------------TYRDDGSTASTAILVGNHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFG------NRML---KQFVVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            SEDG   KLR G SS +G RATMED +      D KTS         FGV+DGHGG   A++  ++L + ++ +  + T D + ++   + + D D ++ +R                                                T    G TA  A++    L+VAN GDSR VIS+  +A  LS+DHKP+   E++RI  AGG +  AG  R+ G L ++RA G      N+ L   KQ V A+P+I  +++ +  + LV+A DG+WD + +++ V
Sbjct:   14 SEDGENDKLRFGLSSMQGWRATMEDAHAAILDLDDKTS--------FFGVYDGHGGKVVAKFCAKYLHQQVISNEAYKTGDVETSLRRAFFRMD-DMMQGQRGWRELAVLGDKMNKFSGMIEGFIWSPRSGDTNNQPDSWPLEDGPHSDFTGPTSGCTACVALIKDKKLFVANAGDSRCVISRKSQAYNLSKDHKPDLEVEKERILKAGGFI-HAG--RINGSLNLTRAIGDMEFKQNKFLPSEKQMVTADPDINTIDLCDDDDFLVVACDGIWDCMSSQELV 284          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: ILKAP_BOVIN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.633e-24
Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = 3
Query:  111 VCMFGVFDGHGGSRAAEYLKEHLFENLL-KHPQ-----FMTDTKLAISETYQQTDVDFLE---SERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI------SKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF-VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            V  F VFDGHGG RA+++  ++L +NL+ K P+          K  + +T++ TD +FL+   S++  ++D GSTA+  + V N LY+AN+GDSR ++      S+   A+ LS++H P + +ER RI+ AGG V      RV GVL +SR+ G+   K+  V + P+I+  ++      ++LA DGL+ V   E+AV
Sbjct:  123 VSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDGISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKD-GSTATCVLAVDNTLYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAV 316          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: ILKAP_RAT (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = 3
Query:  111 VCMFGVFDGHGGSRAAEYLKEHLFENLL-KHPQ-----FMTDTKLAISETYQQTDVDFLE---SERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI------SKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF-VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            V  F VFDGHGG RA+++  ++L +NL+ K P+          K  + +T++ TD +FL+   S++  ++D GSTA+  + V N LY+AN+GDSR ++      S+   A+ LS++H P + +ER RI+ AGG V      RV GVL +SR+ G+   K+  V + P+I+  ++      ++LA DGL+ V   E+AV
Sbjct:  145 VSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKD-GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAV 338          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: ILKAP_MOUSE (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = 3
Query:  111 VCMFGVFDGHGGSRAAEYLKEHLFENLL-KHPQ-----FMTDTKLAISETYQQTDVDFLE---SERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI------SKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF-VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            V  F VFDGHGG RA+++  ++L +NL+ K P+          K  + +T++ TD +FL+   S++  ++D GSTA+  + V N LY+AN+GDSR ++      S+   A+ LS++H P + +ER RI+ AGG V      RV GVL +SR+ G+   K+  V + P+I+  ++      ++LA DGL+ V   E+AV
Sbjct:  145 VSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDIISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKD-GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAV 338          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: ILKAP_HUMAN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.051e-24
Identity = 73/198 (36.87%), Postives = 117/198 (59.09%), Query Frame = 3
Query:  111 VCMFGVFDGHGGSRAAEYLKEHLFENLL-KHPQ-----FMTDTKLAISETYQQTDVDFLE---SERDTYRDDGSTASTAILVGNHLYVANVGDSRTVI------SKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKQF-VVAEPEIQDLEVDEGFELLVLASDGLWDVVPNEDAV 656
            V  F VFDGHGG RA+++  ++L +NL+ K P+          K  + +T++ TD +FL+   S++  ++D GSTA+  + V N LY+AN+GDSR ++      S+   A+ LS++H P + +ER RI+ AGG V      RV GVL +SR+ G+   K+  V + P+I+  ++      ++LA DGL+ V   E+AV
Sbjct:  145 VSYFAVFDGHGGIRASKFAAQNLHQNLIRKFPKGDVISVEKTVKRCLLDTFKHTDEEFLKQASSQKPAWKD-GSTATCVLAVDNILYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR---DGRVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAV 338          
BLAST of FC875579 vs. ExPASy Swiss-Prot
Match: PP2C2_YEAST (Protein phosphatase 2C homolog 2 OS=Saccharomyces cerevisiae GN=PTC2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.903e-24
Identity = 81/228 (35.53%), Postives = 117/228 (51.32%), Query Frame = 3
Query:   30 GYSSFRGKRATMEDFYDIKTSNV---DGQAVCMFGVFDGHGGSRAAEYLKEHLFENLLKHPQFMT-DTKLAISETYQQTDVDFLESERDTYRDDGSTASTAILVG---NHLYVANVGDSRTVISKAGKAIPLSEDHKPNRCDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLK---------QFVVAEPEIQDLEVD-EGFELLVLASDGLWDVVPNEDAVAL 662
            G  + +G R +MED + ++ + +   D   +  +G+FDGHGG++ AEY    + E L +   F   +   A+ +T+  TDV  L+         G TA T+ILV    N L   N GDSRTV++  G A  LS DHKP    E+ RI  A G V      RV G LA+SRA G+   K         Q V   P+I +  +D +  E ++LA DG+WD + ++D V L
Sbjct:   25 GLCAMQGWRMSMEDSHILEPNVLTKSDKDHIAFYGIFDGHGGAKVAEYCGNKIVEILQEQKSFHEGNLPRALIDTFINTDVKLLQDPVMKEDHSGCTA-TSILVSKSQNLLVCGNAGDSRTVLATDGNAKALSYDHKPTLASEKSRIVAADGFVEMD---RVNGNLALSRAIGDFEFKSNPKLGPEEQIVTCVPDILEHSLDYDRDEFVILACDGIWDCLTSQDCVDL 248          
The following BLAST results are available for this feature:
BLAST of FC875579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
PPMBL_MOUSE1.592e-2436.52Probable protein phosphatase 1B-like OS=Mus muscul... [more]
PP2C5_PARTE1.592e-2434.10Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
P2C02_ORYSJ2.080e-2432.50Probable protein phosphatase 2C 2 OS=Oryza sativa ... [more]
P2C58_ORYSJ3.547e-2433.57Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
P2C21_ARATH4.633e-2431.45Probable protein phosphatase 2C 21 OS=Arabidopsis ... [more]
ILKAP_BOVIN4.633e-2436.87Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_RAT6.051e-2436.87Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_MOUSE6.051e-2436.87Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_HUMAN6.051e-2436.87Integrin-linked kinase-associated serine/threonine... [more]
PP2C2_YEAST7.903e-2435.53Protein phosphatase 2C homolog 2 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC31405E04EF CTVClemen1 Citrus clementina cDNA clone C31405E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875579 ID=FC875579; Name=FC875579; organism=Citrus clementina; type=EST; length=670bp
GGAAAAGTGAAGATGGAAAACTGAGATGTGGATACTCAAGTTTTAGGGGA
AAGAGGGCAACTATGGAGGATTTCTATGACATTAAAACTTCCAATGTTGA
TGGGCAAGCTGTCTGCATGTTTGGAGTCTTTGATGGTCATGGTGGTTCCC
GTGCGGCTGAGTATTTGAAGGAGCACCTCTTTGAGAATCTCTTGAAGCAT
CCACAATTTATGACAGACACCAAATTGGCTATAAGTGAAACATATCAACA
GACTGATGTCGACTTTTTGGAATCTGAAAGAGATACTTACAGGGATGATG
GTTCTACTGCTTCAACGGCTATATTGGTTGGTAACCATCTATATGTTGCC
AATGTCGGAGATTCTAGGACTGTAATATCCAAGGCTGGTAAAGCAATTCC
TCTTTCTGAGGATCATAAACCCAACAGATGTGATGAGCGGAAGAGAATTG
AAAATGCCGGAGGCGTTGTAATGTGGGCAGGCACTTGGAGAGTAGGAGGT
GTGCTAGCTATGTCTCGTGCTTTTGGTAACCGCATGCTGAAGCAATTTGT
CGTTGCGGAACCTGAGATCCAGGACCTTGAAGTAGATGAAGGATTTGAGC
TGCTTGTGCTTGCAAGTGATGGACTATGGGATGTAGTACCCAATGAGGAT
GCTGTTGCACTTGCCCGAAC
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