FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROER (Ubiquitin-conjugating enzyme E2 S OS=Drosophila erecta GN=GG18165 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.145e-55
Identity = 97/153 (63.40%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  GVFR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGVFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.495e-55
Identity = 97/153 (63.40%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL LS DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.495e-55
Identity = 97/153 (63.40%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL LS DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROAN (Ubiquitin-conjugating enzyme E2 S OS=Drosophila ananassae GN=GF21161 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.495e-55
Identity = 96/153 (62.75%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.330e-55
Identity = 96/153 (62.75%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.330e-55
Identity = 96/153 (62.75%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 3.330e-55
Identity = 96/153 (62.75%), Postives = 125/153 (81.70%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKP 676
            ENL P  I+Q+ +EL+ ++ +PPEGIKV +N+ D + I A I+GPAGTPY  G+FR+KL L+ DFP +PPK YFLTKIFHPN+A NGEICVNTLKKDW P LG++H+L+ ++CLLI P PESALNE+AGKMLLE Y++Y++ AR+ T IHA+P
Sbjct:    9 ENLSPQTIRQVMRELQEMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQP 161          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.330e-55
Identity = 95/152 (62.50%), Postives = 122/152 (80.26%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAK 673
            ENLPP++I+++ KE+ +L   PPEGIK+  N++D + +   IEGP GTPY  G+FRMKL+L  DFP +PPKGYFLTKIFHPN++ NGEICVN LKKDW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  A++ T IHA+
Sbjct:    6 ENLPPHIIRRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTEIHAQ 157          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.689e-55
Identity = 97/156 (62.18%), Postives = 120/156 (76.92%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKPK 685
            ENL P +I+Q+AKE+  L   PPEG+KV  N+ D + + A IEGP GTPYE G F++KL L  DFP +PPKG+FLTKIFHPN+A NGEICVNTLKKDW   LGL+H+L+ ++CLLI P PESALNE+AGK+LLE Y+ Y+  AR+ T IHAKP  K
Sbjct:    8 ENLSPQIIRQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTEIHAKPTTK 163          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.819e-54
Identity = 96/150 (64.00%), Postives = 118/150 (78.67%), Query Frame = 2
Query:  218 ENLPPNVIKQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIH 667
            ENLPP++I+ + KE+ +L   PP+GIKV  N++D + +   IEGP GTPY  G+FRMKLLL  DFP SPPKGYFLTKIFHPN+  NGEICVN LK+DW   LG+RHVL+ ++CLLI P PESALNE+AG++LLENYEEYA  AR+ T IH
Sbjct:    6 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 155          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
UBE2S_DROER1.145e-5563.40Ubiquitin-conjugating enzyme E2 S OS=Drosophila er... [more]
UBE2S_DROPS1.495e-5563.40Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE1.495e-5563.40Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBE2S_DROAN1.495e-5562.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila an... [more]
UBE2S_DROSI3.330e-5562.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE3.330e-5562.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROME3.330e-5562.75Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UB2SC_XENLA3.330e-5562.50Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBE2S_BRAFL9.689e-5562.18Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBE2S_HUMAN2.819e-5464.00Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
back to top