FC875580

Overview
NameFC875580
Unique NameFC875580
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 38/139 (27.34%), Postives = 68/139 (48.92%), Query Frame = 2
Query:  245 QLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL-KKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYT 658
            ++ KEL+ L + PP  ++   +DD    ++  +  P   PY    F +++    ++P  PP   F TKI+HPN+  NG+IC+  +  ++W P      VL  +  L+  P     L      +L +N E + ++A  +T
Sbjct:    6 RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT 144          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2L6_BOVIN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos taurus GN=UBE2L6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 37/140 (26.43%), Postives = 74/140 (52.86%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL-KKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYT 658
            K++AKEL+ L +  P+ ++   +++D   ++  +  P   PY    FR+ +    ++P  PP   F T+I+HPN+  +G +C+  + KK+W  S     VL  +  L+ +P P   +  +  + L ++ E + + A+ +T
Sbjct:    5 KRVAKELEDLQKELPKYLRNLCSEEDNVLVWHALLLPERPPYNLKAFRLCISFPREYPFQPPTVKFTTRIYHPNVDRDGRVCLPIISKKNWKASTRTCQVLEALNMLVNQPEPGQPVRLELAEQLTQDPELFDQMAQEFT 144          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 36/148 (24.32%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK-KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKP 682
            ++L KEL+ + +   +  +    D+     +  +  P   PY+ G FR+++    ++P  PPK  F TKI+HPNI   G++C+  +  ++W P+     V+  +  L+ +P PE  L     +   ++ +++ ++A  +T  + + +P
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 36/148 (24.32%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK-KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKP 682
            ++L KEL+ + +   +  +    D+     +  +  P   PY+ G FR+++    ++P  PPK  F TKI+HPNI   G++C+  +  ++W P+     V+  +  L+ +P PE  L     +   ++ +++ ++A  +T  + + +P
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 36/148 (24.32%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK-KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKP 682
            ++L KEL+ + +   +  +    D+     +  +  P   PY+ G FR+++    ++P  PPK  F TKI+HPNI   G++C+  +  ++W P+     V+  +  L+ +P PE  L     +   ++ +++ ++A  +T  + + +P
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 33/95 (34.74%), Postives = 52/95 (54.74%), Query Frame = 2
Query:  365 YENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLKKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHAR 649
            Y +G F     +S+ +PH  PK    TK++HPNI   G +C+N L++DW P L +  V+  +  L  EP  E  LN +A  +L +N + +  + R
Sbjct:   74 YLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 36/148 (24.32%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  242 KQLAKELKSLDESPPEGIKVGVNDDDFSTIFADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTLK-KDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYARHARIYTGIHAKPKP 682
            ++L KEL+ + +   +  +    D+     +  +  P   PY+ G FR+++    ++P  PPK  F TKI+HPNI   G++C+  +  ++W P+     V+  +  L+ +P PE  L     +   ++ +++ ++A  +T  + + +P
Sbjct:    5 RRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEKRP 152          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 40/147 (27.21%), Postives = 71/147 (48.30%), Query Frame = 2
Query:  248 LAKELKSLDESPPEGIKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 640
            L K+LK L + P +G   G+ D+    +F     I GP  T YE G F   +    ++P SPP   F ++++HPN+ ++G++C++ L              + W P   +  +++ +  +L  P  ES  N +A K   +N  E+ +
Sbjct:   10 LQKQLKDLCKKPVDGFSAGLVDE--KNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRK 154          
BLAST of FC875580 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 42/147 (28.57%), Postives = 69/147 (46.94%), Query Frame = 2
Query:  248 LAKELKSLDESPPEGIKVGVNDDDFSTIF---ADIEGPAGTPYENGVFRMKLLLSHDFPHSPPKGYFLTKIFHPNIATNGEICVNTL-------------KKDWNPSLGLRHVLIVVRCLLIEPFPESALNEQAGKMLLENYEEYAR 640
            L K+LK L + P +G   G+ D+    IF     I GP  T YE G F   +    ++P+SPP   F + I+HPN+  +G +C++ L              + W P   +  +++ +  +L  P  ES  N +A K   E  +E+ +
Sbjct:    9 LQKQLKDLCKHPVDGFSAGLVDE--KNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKK 153          
The following BLAST results are available for this feature:
BLAST of FC875580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 219
Match NameE-valueIdentityDescription
UB2L6_HUMAN3.855e-1127.34Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UB2L6_BOVIN3.855e-1126.43Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Bos ta... [more]
UB2L3_MOUSE3.855e-1124.32Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN3.855e-1124.32Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN3.855e-1124.32Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UB12L_ARATH3.855e-1134.74Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UB2L3_PONAB5.034e-1124.32Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UBC14_ARATH6.575e-1127.21Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC13_ARATH8.587e-1128.57Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC31405E05EF CTVClemen1 Citrus clementina cDNA clone C31405E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875580 ID=FC875580; Name=FC875580; organism=Citrus clementina; type=EST; length=706bp
GGCTCTCCCACTCTCTTTCTCTTTCTCTTTCTCAAGAGATTAATTGAATC
AGACAAGGTGCTTTCGGCATTCTGCTTACAAATTTTTTATCACTAAGCCT
TTAAGTTCAAAAAGCAACGGAACATTCTTTGCCAAGGTTCTAATTTCCTG
CCAGTGACAGCGCAAAAGAAGAGCTATTACAAGGATCCTGTCATCTTTTG
TTGACATGGCTACTAATGAAAATCTTCCACCAAATGTAATAAAGCAACTT
GCTAAGGAATTGAAGAGTCTTGATGAATCTCCTCCTGAGGGCATTAAAGT
AGGCGTAAATGATGATGATTTTTCAACCATATTTGCTGATATTGAAGGCC
CAGCTGGAACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTA
TCTCATGACTTCCCGCACTCCCCTCCAAAAGGTTACTTCCTGACGAAGAT
ATTCCATCCAAATATTGCAACAAATGGTGAAATTTGTGTGAATACACTAA
AAAAAGATTGGAATCCAAGTCTTGGATTGAGACATGTTCTCATCGTAGTC
CGGTGTTTATTGATTGAACCATTTCCGGAATCAGCATTGAATGAACAGGC
TGGTAAGATGCTGCTTGAAAATTATGAGGAGTATGCCAGACATGCCAGGA
TTTACACTGGGATTCATGCAAAGCCAAAACCAAAATTCAGTCAGGAGCTA
TTTCTG
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