FC875581

Overview
NameFC875581
Unique NameFC875581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 51/100 (51.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  372 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            ++AINGFGRIGRN LR    R DS LDVV VND       + LL YD+  G     V +  N  + VDG+ I V + R+P  LPWAELG+DIV+E TG F
Sbjct:    3 RIAINGFGRIGRNVLRALLER-DSDLDVVAVNDLTEPATLARLLAYDTTSGRLGRPVTVEGNVLV-VDGRRITVTAEREPANLPWAELGVDIVLEATGRF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 90.5077 bits (223), Expect = 8.618e-18
Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGRN  R     K+  ++VV VND       +HLLKYDS+ G   A+V +  N  + V+GK I V + RDP  L W E+G+DIV+E TG F
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLV-VNGKEIIVKAERDPENLAWGEIGVDIVVESTGRF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.470e-17
Identity = 43/102 (42.16%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +K+ INGFGRIGR   R    R  S ++++ +ND   V+  +++LKYDS+ G F   + ++ NET+ V+GK I++ + +DP  L W +L ID+VIE TG+F+
Sbjct:    3 IKIGINGFGRIGRVLFRLAQLR--SNIEILAINDLINVQYIAYMLKYDSIHGNFNGKI-VIKNETLFVNGKKIRITNEKDPKNLMWGDLNIDVVIESTGIFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.508e-17
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVND-SGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGRN  R     K+  ++VV VND +      +HLLKYDS+ G  + D ++V N+ +SV+GK I V + R+P  L W E+G+DIV+E TG F
Sbjct:    3 VKVGINGFGRIGRNVFRA--AVKNPDIEVVAVNDLTANADGLAHLLKYDSVHG--RLDAEVVVNDGVSVNGKEIIVKAERNPENLAWGEIGVDIVVESTGRF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.275e-17
Identity = 45/102 (44.12%), Postives = 66/102 (64.71%), Query Frame = 3
Query:  366 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            K+KVAINGFGRIGR   R      D  + VV +N S   +  +HL+KYD++ G +  +V +   +++ V+GK + ++++RDP QLPW E  IDIV+E TG F
Sbjct:    2 KVKVAINGFGRIGRMVFR--KAMLDDQIQVVAINASYSAETLAHLIKYDTIHGRYDKEV-VAGEDSLIVNGKKVLLLNSRDPKQLPWREYDIDIVVEATGKF 100          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 46/105 (43.81%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKD---SPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRD-PLQLPWAELGIDIVIEGTGVF 671
            ++V INGFGRIGRNF R    +++   + ++VV VND       +HLLK+DS+LG    DV +   +TI V    IK +  R+ P  LPW +LG+D+V+E TG+F
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADIEVVAVNDITDNSTLAHLLKFDSILGRLPYDVSLEGEDTIVVGPAKIKALEVREGPAALPWGDLGVDVVVESTGLF 107          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KV INGFGRIGR   R  +  +   +++V VND       A+++LKYDS  G FK DVK  DN  + VDGK ++    RDP  +PWAE G D VIE TGVF
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVKFSDNG-LDVDGKHVRFYQERDPANIPWAETGADYVIESTGVF 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +KV INGFGRIGR   R    +K S +++V +ND    +  +++LKYDS  G F   V++ D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVEVKDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVFV 674
            +KV INGFGRIGR   R    +K S +++V +ND    +  +++LKYDS  G F   V++ D   I V+GK I+V + RDP  L W E+G+D+V E TG+F+
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVEVKDGHLI-VNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFL 101          
BLAST of FC875581 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.277e-17
Identity = 51/102 (50.00%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  369 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSG-GVKNASHLLKYDSLLGTFKADVKIVDNETISVDGKLIKVVSNRDPLQLPWAELGIDIVIEGTGVF 671
            +KVAINGFGRIGR  LR    RK   L+VV VND    V  A+++ KYDS  G +K +V    N+ + +DG  I V   +DP  LPW +LG+DIVI+ TGVF
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRK--ALEVVAVNDPFISVDYAAYMFKYDSTHGRYKGEVTTSGNDLV-IDGHKIAVFQEKDPANLPWGKLGVDIVIDSTGVF 100          
The following BLAST results are available for this feature:
BLAST of FC875581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 285
Match NameE-valueIdentityDescription
G3P_STRAU8.618e-1851.00Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_BACST8.618e-1848.51Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BUCBP1.470e-1742.16Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_BACCO2.508e-1748.04Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P2_BACSU3.275e-1744.12Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P_MYCAV4.277e-1743.81Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_COCIM4.277e-1749.02Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_SALTY4.277e-1744.12Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI4.277e-1744.12Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_KLULA4.277e-1750.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]

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Properties
Property NameValue
Genbank descriptionC31405E06EF CTVClemen1 Citrus clementina cDNA clone C31405E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875581 ID=FC875581; Name=FC875581; organism=Citrus clementina; type=EST; length=674bp
GATGATGAATATCATCAACTTAATAACTGAATTTAACCGCATAAATAGCT
AGGAGAACTTAGTCTCTCAGCTTTAGAAGTTGCAGCAAATCAGCAACTAA
GCCACAGGCCATGGCCAGTCACTCAGCTCTTGCTCCCTCAAGAATCCCGG
CCATCACTAGGATTCCATCCAAGACTACTCACTCTTTTCCCACTCAATGC
TCCACCAAGAGGCTGGATGTGGCTGAATTCGCTGGCCTTCGAGCAAATGC
AGGCGCGACATACGCCACTGGTGCTAGAGATGCATCCTTCTTTGATGCTG
TGACTGCTCAACTTACTCCTAAGGTTGCAGCAGGATCAGTTCCTGTAAAG
AAAGAAACCGTGGCCAAATTGAAGGTGGCAATTAATGGATTTGGACGTAT
TGGCAGGAACTTCCTCCGATGCTGGCACGGCAGGAAAGACTCACCCCTTG
ATGTTGTTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACCTT
CTAAAATATGACTCATTGCTTGGAACTTTTAAAGCAGACGTGAAAATAGT
GGACAACGAGACCATCTCTGTCGATGGTAAGCTCATCAAGGTTGTCTCTA
ACAGGGACCCTCTCCAGCTCCCTTGGGCTGAGCTCGGAATTGACATCGTT
ATTGAGGGAACAGGAGTTTTTGTG
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