FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PROMH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Proteus mirabilis (strain HI4320) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L ++YG+  P G A ++  E ++A   +       VVK Q+ AGGRG         GGV +V  KEE+   A + LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR T   + +  ++GG  IE +AE+ P +I +  ID   G       +    LA K+  +   + Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFSRYGLPAPAGFACSTPREAEEAASKI--GQGPWVVKCQVHAGGRGKA-------GGVKVVNSKEEIRAFAEQWLGKRLVTYQTDANGQPVTQILVEAATDIAKELYLGAVVDRGTRRVVFMASTEGGVEIEKVAEETPELIHRAIIDPLTGPMPYQGRE----LAFKLGLKGKQVSQFAKIFMGLATIFLERDLALIEINPLVITKDDDLICLDGKLGVDSNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PHOLL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Photorhabdus luminescens subsp. laumondii GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 84/239 (35.15%), Postives = 121/239 (50.63%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KEE+   A + LG+ LVT QT  QG+ V ++ +     +  E+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+      + Q  K++     LF E D  L+EINPL  T+   L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPAGYACTTPREAEEAASKI--GSGPWVVKCQVHAGGRGKA-------GGVKVVNSKEEIRAFAEQWLGKRLVTYQTDAQGQPVRQILVEAATDIAKELYLGAVVDRGTRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPLIGPMSYQGRE----LAFKLGLTGKQVSQFTKIFLGLANLFLERDLALVEINPLVITTQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ENTS8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 83/239 (34.73%), Postives = 124/239 (51.88%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+ G+  P G A ++  E ++A   +       VVK Q+ AGGRG         GGV +VK KEE+   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV ID   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  TS   L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARSGLPTPVGYACSTPREAEEAASKI--GSGPWVVKCQVHAGGRGKA-------GGVKVVKSKEEIRAFAEHWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRGSRRVVFMASTEGGVEIEKVAEETPHLIHKVAIDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKVFMGLANIFLERDLALIEINPLVITSQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACTSZ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 83/238 (34.87%), Postives = 126/238 (52.94%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVK----KLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  ++ A+Y + V KG    +V++  KA + +  D  + V K Q+ AGGRG         GGV +V  E EV     + LG+ LVT QT  QG+ V+ +YL    ++  E+Y  +++DR     + +  ++GG +IE++AEK P+++ KV ID F G       +    LA K+      I Q      +L K+F E D +L+EINPL       L   DAK+  D NA +R
Sbjct:    1 MNLHEYQSKQIFAQYDLPVSKGYPCETVEQALKAIEKLGGD--QWVAKCQVYAGGRGKA-------GGVKVVSSEAEVRSFFERFLGKRLVTLQTDAQGQPVNTIYLEACAAVKKELYVGMVIDRANRRIVFMASTEGGVNIEEVAEKTPHLLHKVAIDPFMGAQPFQGRE----LACKLGLTGKQIHQFAHIFCRLSKMFSEKDLSLVEINPLVILQNDDLHCLDAKIVVDGNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIBY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acinetobacter baumannii (strain AYE) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 77/235 (32.77%), Postives = 124/235 (52.77%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ   L+ +YG+ V +G+   + DE   A + +    K  V+K+Q+ AGGRG         GGV + K KE+V + A  ++G  LVT QT   G+ V+ + + E +  V  E+Y   ++DR +     +  ++GG  IE +AE+ P  I+KV +D   G+    A +V   L  K       ++ +   Y+ F E+D  L EINPL+     +++  DAK+  D NA +R
Sbjct:    1 MNLHEYQAKALLKEYGMPVQEGILATNADEAVAAFEQL--GGKFAVMKAQVHAGGRGKA-------GGVKVAKSKEDVIEFANNIIGTRLVTYQTDANGQPVNSIIVAEDVYPVERELYLGAVVDRSSRRITFMASTEGGVEIEKVAEETPEKIIKVEVDPLVGLQPFQAREVAFALGLKDKQIGQFVKIMTAAYQAFVENDFALFEINPLSVRENGEILCVDAKVGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIBT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=sucC PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 77/235 (32.77%), Postives = 124/235 (52.77%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ   L+ +YG+ V +G+   + DE   A + +    K  V+K+Q+ AGGRG         GGV + K KE+V + A  ++G  LVT QT   G+ V+ + + E +  V  E+Y   ++DR +     +  ++GG  IE +AE+ P  I+KV +D   G+    A +V   L  K       ++ +   Y+ F E+D  L EINPL+     +++  DAK+  D NA +R
Sbjct:    1 MNLHEYQAKALLKEYGMPVQEGILATNADEAVAAFEQL--GGKFAVMKAQVHAGGRGKA-------GGVKVAKSKEDVIEFANNIIGTRLVTYQTDANGQPVNSIIVAEDVYPVERELYLGAVVDRSSRRITFMASTEGGVEIEKVAEETPEKIIKVEVDPLVGLQPFQAREVAFALGLKDKQIGQFVKIMTAAYQAFVENDFALFEINPLSVRENGEILCVDAKVGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIBC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acinetobacter baumannii (strain ACICU) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 77/235 (32.77%), Postives = 124/235 (52.77%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ   L+ +YG+ V +G+   + DE   A + +    K  V+K+Q+ AGGRG         GGV + K KE+V + A  ++G  LVT QT   G+ V+ + + E +  V  E+Y   ++DR +     +  ++GG  IE +AE+ P  I+KV +D   G+    A +V   L  K       ++ +   Y+ F E+D  L EINPL+     +++  DAK+  D NA +R
Sbjct:    1 MNLHEYQAKALLKEYGMPVQEGILATNADEAVAAFEQL--GGKFAVMKAQVHAGGRGKA-------GGVKVAKSKEDVIEFANNIIGTRLVTYQTDANGQPVNSIIVAEDVYPVERELYLGAVVDRSSRRITFMASTEGGVEIEKVAEETPEKIIKVEVDPLVGLQPFQAREVAFALGLKDKQIGQFVKIMTAAYQAFVENDFALFEINPLSVRENGEILCVDAKVGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIB5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acinetobacter baumannii (strain AB0057) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 77/235 (32.77%), Postives = 124/235 (52.77%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ   L+ +YG+ V +G+   + DE   A + +    K  V+K+Q+ AGGRG         GGV + K KE+V + A  ++G  LVT QT   G+ V+ + + E +  V  E+Y   ++DR +     +  ++GG  IE +AE+ P  I+KV +D   G+    A +V   L  K       ++ +   Y+ F E+D  L EINPL+     +++  DAK+  D NA +R
Sbjct:    1 MNLHEYQAKALLKEYGMPVQEGILATNADEAVAAFEQL--GGKFAVMKAQVHAGGRGKA-------GGVKVAKSKEDVIEFANNIIGTRLVTYQTDANGQPVNSIIVAEDVYPVERELYLGAVVDRSSRRITFMASTEGGVEIEKVAEETPEKIIKVEVDPLVGLQPFQAREVAFALGLKDKQIGQFVKIMTAAYQAFVENDFALFEINPLSVRENGEILCVDAKVGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIB3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acinetobacter baumannii (strain AB307-0294) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 77/235 (32.77%), Postives = 124/235 (52.77%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ   L+ +YG+ V +G+   + DE   A + +    K  V+K+Q+ AGGRG         GGV + K KE+V + A  ++G  LVT QT   G+ V+ + + E +  V  E+Y   ++DR +     +  ++GG  IE +AE+ P  I+KV +D   G+    A +V   L  K       ++ +   Y+ F E+D  L EINPL+     +++  DAK+  D NA +R
Sbjct:    1 MNLHEYQAKALLKEYGMPVQEGILATNADEAVAAFEQL--GGKFAVMKAQVHAGGRGKA-------GGVKVAKSKEDVIEFANNIIGTRLVTYQTDANGQPVNSIIVAEDVYPVERELYLGAVVDRSSRRITFMASTEGGVEIEKVAEETPEKIIKVEVDPLVGLQPFQAREVAFALGLKDKQIGQFVKIMTAAYQAFVENDFALFEINPLSVRENGEILCVDAKVGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_KLEP7 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 82/239 (34.31%), Postives = 123/239 (51.46%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +VK KEE+   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I K+ ID   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVKSKEEIRAFAEHWLGKRLVTYQTDANGQPVNQILVEAATDIDKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKIAIDPLAGPMPYQGRE----LAFKLGLEGKQVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_PROMH2.971e-2833.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PHOLL2.971e-2835.15Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ENTS82.971e-2834.73Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACTSZ2.971e-2834.87Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIBY2.971e-2832.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIBT2.971e-2832.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIBC2.971e-2832.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIB52.971e-2832.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIB32.971e-2832.77Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_KLEP73.881e-2834.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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