FC875593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_STAA8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain NCTC 8325) GN=sucC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.865e-39 Identity = 95/240 (39.58%), Postives = 137/240 (57.08%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKG----LAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 +NIHEYQG E+ G+ VP+G A +V++ K+ DV+ VVK+QI AGGRG GGV I K EVE A ++LG+ LVT QTGP+GK + ++Y+ E ++ E Y ++DR T ++ +GGT IE++A K P I K ID G++ A ++ + N A + + LY +F E DC+++EINPL T+ ++A DAK+NFDDNA FR K Sbjct: 1 MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVY------VVKAQIHAGGRGKA-------GGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHK 227
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_STAA3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain USA300) GN=sucC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.865e-39 Identity = 95/240 (39.58%), Postives = 137/240 (57.08%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKG----LAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 +NIHEYQG E+ G+ VP+G A +V++ K+ DV+ VVK+QI AGGRG GGV I K EVE A ++LG+ LVT QTGP+GK + ++Y+ E ++ E Y ++DR T ++ +GGT IE++A K P I K ID G++ A ++ + N A + + LY +F E DC+++EINPL T+ ++A DAK+NFDDNA FR K Sbjct: 1 MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVY------VVKAQIHAGGRGKA-------GGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHK 227
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_STAA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain JH1) GN=sucC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.865e-39 Identity = 95/240 (39.58%), Postives = 137/240 (57.08%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKG----LAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 +NIHEYQG E+ G+ VP+G A +V++ K+ DV+ VVK+QI AGGRG GGV I K EVE A ++LG+ LVT QTGP+GK + ++Y+ E ++ E Y ++DR T ++ +GGT IE++A K P I K ID G++ A ++ + N A + + LY +F E DC+++EINPL T+ ++A DAK+NFDDNA FR K Sbjct: 1 MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVY------VVKAQIHAGGRGKA-------GGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHK 227
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_STAA1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=sucC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.865e-39 Identity = 95/240 (39.58%), Postives = 137/240 (57.08%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKG----LAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 +NIHEYQG E+ G+ VP+G A +V++ K+ DV+ VVK+QI AGGRG GGV I K EVE A ++LG+ LVT QTGP+GK + ++Y+ E ++ E Y ++DR T ++ +GGT IE++A K P I K ID G++ A ++ + N A + + LY +F E DC+++EINPL T+ ++A DAK+NFDDNA FR K Sbjct: 1 MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVY------VVKAQIHAGGRGKA-------GGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLALDAKINFDDNALFRHK 227
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_POLNS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Polynucleobacter necessarius (strain STIR1) GN=sucC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.865e-39 Identity = 94/241 (39.00%), Postives = 139/241 (57.68%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 + IHEYQG EL+ ++ + VP G+ SVDE KA + + VVK+QI AGGRG G GGV + K +EV+ A ++LG L T QTGP+G+ V+++ + + + E YF+I+ DR T +I+ S+GG IE++AE +P I+KV +D G+TD D + G+ A A + K LYK + ++D +L+EINPL ++ A DAK NFD NA FR + + Sbjct: 1 MKIHEYQGKELLRQFNVPVPNGIPAFSVDEAVKAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLAKSMDEVKRYASEILGMQLKTHQTGPEGQKVNRLLIEDGADIKKEYYFSIVTDRGTQKNVIMASSEGGMDIEEVAESHPEKIIKVFVDPMVGLTDADCDIIAKGIGVPEASIPMARDVFKNLYKTYWDTDASLVEINPLILEGNGKIKALDAKFNFDPNALFRHPEIVAY 232
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BACSU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus subtilis GN=sucC PE=1 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 2.865e-39 Identity = 92/236 (38.98%), Postives = 137/236 (58.05%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 +NIHEYQG E++ KYG++VP+G + +E ++ + + VVK+QI AGGRG GGV I K +EV+ A ++LG+ LVT QTGP G+++ ++ + E + E Y ++LDR T+ +++ +GGT IE++AEK P I K ID G+ A ++ + A + + LYK F E DC++ EINPL T ++A DAKLNFD NA +RQK Sbjct: 1 MNIHEYQGKEVLRKYGVSVPEGKVAFTAEEAVESAKSL--SSSVYVVKAQIHAGGRGKA-------GGVKIAKSLDEVKAYAEELLGKTLVTHQTGPDGQVIKRLLIEEGCDIKKEYYIGLVLDRATSRIVLMASEEGGTEIEEVAEKTPEKIKKAVIDPAVGLQGYQAREIAFAINIPKELVGKAAKFMLGLYKAFVEKDCSIAEINPLVVTGDGNVMALDAKLNFDSNALYRQK 227
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BACCN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=sucC PE=3 SV=1) HSP 1 Score: 162.155 bits (409), Expect = 2.865e-39 Identity = 94/239 (39.33%), Postives = 137/239 (57.32%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742 +NIHEYQG ++ YG++VP G +V+E +A +++ D VVK+QI AGGRG GGV + K EEV A +LG LVT QTGP+GK V ++ + E + E Y ++LDR T+ +++ +GGT IE++AEK P I K ID G+ A ++ + A++ + LY++F E DC++ EINPL T +++A DAKLNFD NA +R K L Sbjct: 1 MNIHEYQGKAILRSYGVSVPNGKVAFTVEEAVEAAKELGTD--VCVVKAQIHAGGRGKA-------GGVKVAKNLEEVRTYAENILGSTLVTHQTGPEGKEVKRLLIEEGCDIKKEYYVGLVLDRATSQVVLMASEEGGTEIEEVAEKTPEKIFKEYIDPAVGLQGFQARRIAFHINIPKELVGQAVKFMMGLYRVFIEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRHKDIL 230
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SINMW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=sucC PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.741e-39 Identity = 98/239 (41.00%), Postives = 136/239 (56.90%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 +NIHEYQ L+ YG V +G+A+ S DE A + + VVKSQI AGGRG G FK + KGGV + K +EV A +MLG LVTKQTGP GK V+++Y+ + + E+Y +I++DR + ++GG IE +AE P IV V ID G+T +D + + L R DA + LYK F E D +LLE+NPL + ++ DAK++FD NA FR + Sbjct: 1 MNIHEYQAKALLKSYGAPVAEGVAIFSADEAAAAAKKL--PGPLYVVKSQIHAGGRGKGKFKELGADAKGGVRLAKSADEVVAHAREMLGNTLVTKQTGPSGKQVNRLYIEDGADIDRELYLSILVDRSVGQVAFVVSTEGGMDIEAVAEHTPEKIVTVAIDPDKGVTADDLKTLTEALKLDGEARADAEKLFPILYKAFVEKDMSLLEVNPLIVMTNGRMRVLDAKVSFDGNALFRHE 237
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RALPJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ralstonia pickettii (strain 12J) GN=sucC PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.741e-39 Identity = 93/241 (38.59%), Postives = 139/241 (57.68%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 +NIHEYQG E++ KY + VP+G+ SVDE KA + + VVK+QI AGGRG G GGV + K E+V++ A +LG LVT QTGP+GK+V ++ + E + E+Y ++++DR + ++ S+GG IE++AE +P I + ID G+ D A + + A A + ++ LYK F E+D + EINPL T +++A DAK NFD NA FR + + Sbjct: 1 MNIHEYQGKEILRKYNVPVPRGIPAFSVDEAIKAAETL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSIEQVKEYASSILGMTLVTHQTGPEGKLVKRLLIEEGADIKKELYVSLVVDRVSQQVALMASSEGGMDIEEVAESHPEKIHTLLIDPQAGLQDAQADDIARKIGVPDASVPQARQALQGLYKAFWETDASQAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAY 232
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_POLSQ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=sucC PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.741e-39 Identity = 94/241 (39.00%), Postives = 139/241 (57.68%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 + IHEYQG EL+ ++ + VP G+ SVDE KA + + VVK+QI AGGRG G GGV + + +EV+ A ++LG L T QTGP+G+ V+++ + + + E YF+I+ DR T +I+ S+GG IE++AE +P I+KV +D G+TD D V G+ A A + K LYK + ++D +L+EINPL ++ A DAK NFD NA FR + + Sbjct: 1 MKIHEYQGKELLRQFNVPVPNGIPAFSVDEAVKAAEKL--GGPVWVVKAQIHAGGRGKG-------GGVKLARSMDEVKKYASEILGMQLKTHQTGPEGQKVNRLLIEDGADIKKEYYFSIVTDRGTQKNVIMASSEGGMDIEEVAESHPEKIIKVFVDPMVGLTDADCDIVAKGIGVPEASIPMARDVFKNLYKTYWDTDASLVEINPLILEGNGKIKALDAKFNFDPNALFRHPEIVAY 232 The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bpback to top |