FC875593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NOVAD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=sucC PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 6.382e-39 Identity = 97/241 (40.25%), Postives = 138/241 (57.26%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKK----LYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +N+HEYQ EL+AKYG+ +P G+A +V+E A + + VVK+QI AGGRG G FK + KGGV + K EEVE A +MLG LVT QTG GK V+++Y+ + + + E Y ++++DR T II ++GG IE++A P I + ID G V G A K++ D ++Q K LY F DC++LEINPL +T L+ D K++FD NA +R Sbjct: 1 MNVHEYQAKELLAKYGVGIPAGIAALTVEEAVAAAKQL--PGPLYVVKAQIHAGGRGKGKFKELPADAKGGVRLAKSIEEVEAFAKEMLGNTLVTVQTGEAGKQVNRLYVTDGVDIDKEYYLSMVVDRATGRVAIIVSTEGGMDIEEVAHSTPEKIATIVIDPAEGFMPHHGRAV--GFALKLS--GDLLKQAAKIAEQLYTAFVALDCSMLEINPLVQTKDGNLLVLDTKMSFDSNALYR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CUPTR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=sucC PE=3 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 6.382e-39 Identity = 94/241 (39.00%), Postives = 139/241 (57.68%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 +NIHEYQG E++ KY + VP+G+ SVDE KA + + VVK+QI AGGRG G GGV + K +EV+ A +LG LVT QTGP+GK V+++ + E + E+Y ++++DR + ++ S+GG IE++A P I + I+ G+TD DA + + A A + ++ LYK F E+D +L EINPL T +++A DAK NFD NA FR + + Sbjct: 1 MNIHEYQGKEILRKYNVPVPRGIPAFSVDEALKAAEQL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKSMDEVKTYASNILGMQLVTHQTGPEGKKVNRLLIEEGADIKKELYVSLVVDRVSQKIALMASSEGGMDIEEVAAHTPEKIHTLIIEPSTGLTDADADDIARKIGVPDASVAQARQALQGLYKAFYETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAY 232
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_STAS1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sucC PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.335e-39 Identity = 91/236 (38.56%), Postives = 133/236 (56.36%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 +NIHEYQG + G+ VP+G + +E + +++ D K VVK+QI AGGRG GGV I K EVE A ++LG+ LVT QTGP+GK + ++Y+ E + E Y ++DR T ++ +GGT IE++A K P I K ID G+ A ++ + N A + + LY +F E DC+++EINPL T +++A DAK+NFDDNA F+ K Sbjct: 1 MNIHEYQGKAIFRSMGVAVPEGRVAYTAEEAVEKAKEL--DSKVYVVKAQIHAGGRGKA-------GGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGCDIQKEYYVGFVIDRATDRVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVVGLAPYQARRIAFNINIPKESINKAAKFLVSLYNVFIEKDCSIVEINPLVTTGEGEVLALDAKVNFDDNALFKHK 227
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NITSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nitratiruptor sp. (strain SB155-2) GN=sucC PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.335e-39 Identity = 92/234 (39.32%), Postives = 135/234 (57.69%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ E+ +YG+ VP+G + E ++ Q + D VVK+QI AGGRG GGV + + +EVE +A +MLG LVT QTGP+GK V KVY+ E + E Y ++LDR + P+++ ++GG IE++A K P I+KV ID G K+ GL + I+ + LYK++ + D L+EINPL +T + +A DAK+ FDDNA ++ Sbjct: 1 MNIHEYQAKEIFREYGVPVPRGEVAFTGPEAREVAQRLGGDL--WVVKAQIHAGGRGKA-------GGVKLARSLDEVEKIAEEMLGMTLVTHQTGPEGKKVEKVYVEEGADIQKEYYLGMVLDRSSEMPVMMASTEGGMEIEEVAAKTPEKIIKVAIDPTIGFQGFHGRKLAFGLGLAKEEIRPFIQFAEALYKVYMDKDANLIEINPLIKTGDGRFLALDAKMGFDDNALYK 225
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_DIAST (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Diaphorobacter sp. (strain TPSY) GN=sucC PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.335e-39 Identity = 93/234 (39.74%), Postives = 137/234 (58.55%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + IHEYQG E++ +G+ VP+G+ +V E +A Q + VVK+QI AGGRG G GGV + K ++V+ A ++LG LVT QTGP+G+ V ++Y+ + + NE+Y +++ DR T +I S+GG IE++A P I+ ID GIT E + KV + A + A++ KLYK + ++D +L+EINPL S L+A DAK NFD NA FR Sbjct: 1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKTIDDVKARASEILGMQLVTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEMIDPLTGITPEQSKKVAAAIGLTGASVDQAVDLFAKLYKCYMDTDASLVEINPLNCDSKGNLMALDAKFNFDANALFR 225
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLPD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium phaeobacteroides (strain DSM 266) GN=sucC PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.335e-39 Identity = 90/241 (37.34%), Postives = 141/241 (58.51%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742 +NIHEYQG +++ K+G+ VPKG+ S +E K+A +F + +V+K+QI AGGRG GGV + K EEV D+A +MLG LVT QTGP+GK V ++ + E +++ E Y I LDR T+ +++ ++GG IE +AE+ P ++K+ ++ G+ A + L + + ++ + LY + D + EINPL T +++A DAK+NFD NA FR K +L Sbjct: 1 MNIHEYQGKDILRKFGVAVPKGIVAFSPEEAKQAAIQLFEEQNSPVVVIKAQIHAGGRGKA-------GGVKLAKSPEEVFDIAQQMLGITLVTHQTGPEGKEVRRLLVEEGMNIDKEFYVGITLDRSTSQNVLMVSTEGGMEIEKVAEETPEKLLKIQVNPLFGLQAFQARQAAFFLELEGEQFKNTVKFITALYNAYTSIDAAIAEINPLVVTKEGRVLALDAKINFDSNALFRHKDFL 234
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACISJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acidovorax sp. (strain JS42) GN=sucC PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.335e-39 Identity = 93/234 (39.74%), Postives = 137/234 (58.55%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + IHEYQG E++ +G+ VP+G+ +V E +A Q + VVK+QI AGGRG G GGV + K ++V+ A ++LG LVT QTGP+G+ V ++Y+ + + NE+Y +++ DR T +I S+GG IE++A P I+ ID GIT E + KV + A + A++ KLYK + ++D +L+EINPL S L+A DAK NFD NA FR Sbjct: 1 MKIHEYQGKEILRSFGVPVPRGIPAFTVQEAVEAAQKL--GGPVWVVKAQIHAGGRGKG-------GGVKVAKTIDDVKARASEILGMQLVTHQTGPEGQKVRRLYIEDGADIKNELYVSLVTDRGTQKVALIASSEGGMDIEEVAHSTPEKIITEMIDPLTGITPEQSKKVAAAIGLTGASVDQAVDLFAKLYKCYMDTDASLVEINPLNCDSKGNLMALDAKFNFDANALFR 225
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_STAAB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sucC PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.089e-38 Identity = 94/240 (39.17%), Postives = 136/240 (56.67%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKG----LAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 +NIHEYQG E+ G+ VP+G A +V++ K+ DV+ VVK+QI AGGRG GGV I K EVE A ++LG+ LVT QTGP+GK + ++Y+ E ++ E Y ++DR T ++ +GGT IE++A K P I K ID G++ A ++ + N A + + LY +F E DC+++EINPL T+ ++ DAK+NFDDNA FR K Sbjct: 1 MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKEFNSDVY------VVKAQIHAGGRGKA-------GGVKIAKSLSEVETYAKELLGKTLVTHQTGPEGKEIKRLYIEEGCAIQKEYYVGFVIDRATDQVTLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKFLLALYNVFIEKDCSIVEINPLVTTADGDVLVLDAKINFDDNALFRHK 227
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHORT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=sucC PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.089e-38 Identity = 94/237 (39.66%), Postives = 136/237 (57.38%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ +++AKYG+ V KG + +E +K D+ VVKSQI AGGRG G FK +G KGGV +VK +EV A +MLG LVT Q+G +GK V +VY+ + + E+Y ++++DR T+ ++ ++GG IE++A P I ID GI+ V L + + + LYK F E+DC++LEINPL T Q++ D K+NFD NA +R Sbjct: 1 MNIHEYQAKQVLAKYGVPVLKGGVAYTAEEAEKVALDLAGP--VYVVKSQIHAGGRGKGHFKEPSAGDKGGVRVVKSTDEVFSNAKQMLGATLVTHQSGAEGKEVKRVYIEDGCDIKRELYLSLLVDRATSAVTVMASTEGGMDIEEVANHSPEKIFFQAIDQATGISGFHCRNVAFSLGLEGKQVGAFTKLLSALYKCFTETDCSMLEINPLVVTGDGQVIPLDCKMNFDSNALYR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_GEOTN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus thermodenitrificans (strain NG80-2) GN=sucC PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.089e-38 Identity = 90/234 (38.46%), Postives = 137/234 (58.55%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ E++ YG++VP G +VDE +A + + VVK+QI AGGRG GGV + K EEV A ++LG++LVT QTGP+GK V ++ + E + E Y +++DR T+ +++G +GGT IE++A K P I K +D G+ A ++ + N A++ + LY++F + DC++ EINPL T +++A DAKLNFD NA +R Sbjct: 1 MNIHEYQAKEILRSYGVSVPNGRVAFTVDEAVEAAKAL--GTSVCVVKAQIHAGGRGKA-------GGVKVAKSLEEVRTYASELLGKVLVTHQTGPEGKEVKRLLIEEGCDIQKEYYIGLVVDRATSRVVLMGSEEGGTEIEEVAAKTPEKIFKEYVDPAVGLQAFQARRLAFNINIPKKLVNQAVKFMMGLYQVFVDKDCSIAEINPLVVTGDGKVMALDAKLNFDSNALYR 225 The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bpback to top |