FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SALG2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 82/239 (34.31%), Postives = 123/239 (51.46%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +VK KEE+   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVKSKEEIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIGKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SALEP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salmonella enteritidis PT4 (strain P125109) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 82/239 (34.31%), Postives = 123/239 (51.46%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +VK KEE+   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVKSKEEIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIGKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SALDC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salmonella dublin (strain CT_02021853) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 82/239 (34.31%), Postives = 123/239 (51.46%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +VK KEE+   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVKSKEEIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIDKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SALCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salmonella choleraesuis GN=sucC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 82/239 (34.31%), Postives = 123/239 (51.46%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +VK KEE+   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVKSKEEIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIGKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SALA4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salmonella agona (strain SL483) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 82/239 (34.31%), Postives = 123/239 (51.46%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +VK KEE+   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVKSKEEIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIGKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSYA2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.275e-28
Identity = 81/235 (34.47%), Postives = 124/235 (52.77%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  EL+  YG+ + +GL   S DE   A      D    V+K+Q+ AGGRG         GGV +VK +EE + +  +++G  LVT QT   G+ V+ V + E +  V  E+Y   ++DR +     +  ++GG  IE +AE+ P  I KV ID   G+    A +V   L  +    +  ++ +   Y+ F E+D  LLEINPLA     ++V  D K++ D NA +R
Sbjct:    1 MNLHEYQAKELLKSYGLPIQEGLIAYSGDEAAAAFDKTPTDIA--VIKAQVHAGGRGKA-------GGVKLVKTREEAKQVTDELIGTNLVTYQTDAAGQPVNFVLVAEDMYPVQTELYLGAVVDRSSRRVTFMASTEGGVEIEKVAEETPEKIFKVSIDPLVGLLPFQAREVAFKLGLEGKQISQFVKLMTGAYQAFVENDIDLLEINPLAVRENGEIVCVDGKISIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XANOR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas oryzae pv. oryzae GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 85/237 (35.86%), Postives = 116/237 (48.95%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N HEYQ  +L+A+YGI VP G   A+ DE       +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      ++ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+           L             +  LYKLF E D  L+EINPLA      L A D K + DDNAAFRQK+
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPSGKVAATPDEAVDVATSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAAAKMLGTKMSTYQTAGVELPINLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHALNVDFVEGVQGYHGRDFGFKLGLNAKQAGQFASIMVNLYKLFNEKDLALVEINPLAILDDGNLYALDGKFDSDDNAAFRQKQ 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XANOP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 85/237 (35.86%), Postives = 116/237 (48.95%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N HEYQ  +L+A+YGI VP G   A+ DE       +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      ++ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+           L             +  LYKLF E D  L+EINPLA      L A D K + DDNAAFRQK+
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPSGKVAATPDEAVDVATSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAAAKMLGTKMSTYQTAGVELPINLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHALNVDFVEGVQGYHGRDFGFKLGLNAKQAGQFASIMVNLYKLFNEKDLALVEINPLAILDDGNLYALDGKFDSDDNAAFRQKQ 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XANOM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 85/237 (35.86%), Postives = 116/237 (48.95%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N HEYQ  +L+A+YGI VP G   A+ DE       +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      ++ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+           L             +  LYKLF E D  L+EINPLA      L A D K + DDNAAFRQK+
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPSGKVAATPDEAVDVATSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAAAKMLGTKMSTYQTAGVELPINLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHALNVDFVEGVQGYHGRDFGFKLGLNAKQAGQFASIMVNLYKLFNEKDLALVEINPLAILDDGNLYALDGKFDSDDNAAFRQKQ 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSYWF (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Psychrobacter sp. (strain PRwf-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.971e-28
Identity = 79/238 (33.19%), Postives = 125/238 (52.52%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L+  YG+ + KG+   + +E  +A      D    V+K+Q+ AGGRG         GGV +VK +EE +++A  ++G  LVT QT  +G+ V+ V + E +  V  E+Y   ++DR T     +  ++GG  IE +AE+ P  I  + +D   G+    A +V   L  +    N  ++ +   YK F E+D  ++EINPLA     +L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKLLLESYGLPIQKGIIAYNGEEAAEAFDKTPTD--VAVIKAQVHAGGRGKA-------GGVKLVKTREEAKEVAESLIGTNLVTYQTDAEGQPVNFVLVAEDMYPVKTELYLGAVVDRATRRVTFMASTEGGVEIEKVAEETPEKIFSITVDPLVGLLPFQAREVGFKLGLEGKQINQFVKLMTGAYKAFVENDFDMIEINPLAVRENGELACVDGKIGVDSNALFRQPK 229          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_SALG22.275e-2834.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SALEP2.275e-2834.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SALDC2.275e-2834.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SALCH2.275e-2834.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SALA42.275e-2834.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSYA22.275e-2834.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANOR2.971e-2835.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANOP2.971e-2835.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANOM2.971e-2835.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSYWF2.971e-2833.19Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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