FC875593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOCS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=sucC PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 8.054e-42 Identity = 96/236 (40.68%), Postives = 141/236 (59.75%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGL--KGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ L+ KYG+ VP+G +++E + +++ VVKSQI AGGRG G FK KGGV +VK ++V MLG++LVTKQTGP+GK V ++Y+ E + E+Y +++LDR T+ I+ ++GG IE++A P IVKV ID G+ A KV L + + + +YK F + D +L+E+NPL T +++A DAK+NFDDNA +R Sbjct: 1 MNIHEYQAKSLLKKYGVAVPRGGVAYTLEEARAVAKEL--GGPVWVVKSQIHAGGRGAGRFKDDPNGKGGVRVVKSIDDVVASTDAMLGKVLVTKQTGPEGKEVKRIYVEEGADIKRELYLSMLLDRATSRITIVASTEGGMEIEEVAHTSPEKIVKVAIDPVQGLQGYHARKVAFALGLEGKQVGACTKFLLGMYKAFTDLDMSLVEVNPLVVTGSGEVLALDAKVNFDDNALYR 234
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BARHE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella henselae GN=sucC PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 8.054e-42 Identity = 98/237 (41.35%), Postives = 141/237 (59.49%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ L+ +YG + G+AV SV++ +K + + VVKSQI AGGRG G FK KGGV + K EEV +MLG+ LVTKQTGP+GK V+++Y+ + + E+Y ++++DR + ++GG IE +AE+ P I+ +PI+ G+T D A++ D L + R D + LYK FCE D +LLEINPL + L DAK++FD+NA FR Sbjct: 1 MNIHEYQAKRLLHEYGAPIANGVAVYSVEQAEKWAKKL--PGPLYVVKSQIHAGGRGKGKFKELDPDAKGGVRLAKSVEEVVANVKEMLGKTLVTKQTGPEGKQVNRLYIEDGADIERELYLSLLVDRNVGRVAFVVSTEGGMDIETVAEETPEKILTLPINSTQGVTSSDCARLCDALDLHDSAREDGEKLFPILYKAFCEKDMSLLEINPLIVMTNGHLRVLDAKVSFDNNALFR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BARBK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=sucC PE=3 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 8.054e-42 Identity = 101/237 (42.62%), Postives = 140/237 (59.07%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ L+ +YG V G+AV SV++ +K + + VVKSQI AGGRG G FK S KGGV + K EEV +MLG+ LVTKQTGP+GK V+++Y+ + ++ E+Y ++++DR T + ++GG IE +A + P I + ID G+TD D K+ D L R D + LYK FCE D +LLEINPL +L DAK++FD+NA FR Sbjct: 1 MNIHEYQAKRLLHEYGAPVANGVAVYSVEQAEKWAKKL--PGPLYVVKSQIHAGGRGKGNFKELDSDAKGGVRLAKSVEEVVANVKEMLGKTLVTKQTGPEGKQVNRLYIEDGANIERELYLSLLIDRTTGRVAFVVSTEGGMDIETVAAETPEKICTLSIDPAEGVTDADCVKLCDELNLSGNAREDGEKLFPILYKAFCEKDMSLLEINPLIVMDDGRLRVLDAKVSFDNNALFR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BACHD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacillus halodurans GN=sucC PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.374e-41 Identity = 99/241 (41.08%), Postives = 141/241 (58.51%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYLLF 748 +NIHEYQG EL+ +YG+ VP G SVDE +A +++ VVK+QI AGGRG GGV + K +EV A ++LG+ LVT QTGP+GK V ++ + E + E Y ++LDR T+ +++ +GGT IE++AEK P I K ID G+ A ++ + A++ + LYK+F E DC++ EINPL T +++A DAKLNFD NA +RQK L F Sbjct: 1 MNIHEYQGKELLRQYGVAVPNGKVAFSVDEAVEAAKEL--GSNVCVVKAQIHAGGRGKA-------GGVKVAKNLDEVRTYADEILGKTLVTHQTGPEGKEVKRLLIEEGCDIQKEYYVGLVLDRATSRVVMMASEEGGTEIEEVAEKTPEKIFKEIIDPVVGLQGFQARRLAFNINIPKELVGQAVKFMLGLYKVFVEKDCSIAEINPLVTTGDGKVMALDAKLNFDSNALYRQKAILEF 232
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLT3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=sucC PE=3 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.794e-41 Identity = 92/241 (38.17%), Postives = 146/241 (60.58%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742 +NIHEYQG E++ +G+ VPKG+ S +E KKA + + + +VVK+QI AGGRG GGV +V+ +E ++A +M+G LVT QTGP+GK V ++ + E +++ E+Y I LDR T+ +++ ++GG IE +AE+ P ++K+ I G+ A + L + +A++ + LY + ++DC+L EINPL T +++A DAK+NFDDNA FR K Y+ Sbjct: 1 MNIHEYQGKEILRGFGVTVPKGIVAFSAEEAKKAAETLLTEQGGGVVVVKAQIHAGGRGKA-------GGVKLVRSADEAFEVATQMIGTTLVTHQTGPEGKEVRRLLVEEGMNIEKELYLGITLDRATSCNVLMVSTEGGMEIEKVAEETPEKLLKIQIHPTLGLQPNQAREAAFFLGLEGEQFKNAVKFISALYNAYMKADCSLAEINPLVVTKEGRVIALDAKINFDDNALFRHKDYI 234
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PARDP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Paracoccus denitrificans (strain Pd 1222) GN=sucC PE=3 SV=1) HSP 1 Score: 169.088 bits (427), Expect = 2.343e-41 Identity = 98/238 (41.18%), Postives = 137/238 (57.56%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730 +NIHEYQ L+ +YG V G V DE K A ++ D VVK+QI AGGRG G FK +G KGGV + K EE E+LA +MLG+ LVT QTG GK V+++Y+ + + E+Y A+++DR T+ + ++GG IE++A P IV +D +G++D +V L A + VK LY++F E D +LEINPL L A DAK+ FD+NA +RQ Sbjct: 1 MNIHEYQAKALLRQYGAPVSDGRVVMKADEAKAAAGEL--DGPLWVVKAQIHAGGRGKGHFKEKEAGEKGGVRLAKSVEEAEELARQMLGRTLVTHQTGETGKQVNRIYIEDGSDIERELYLALLVDRGTSRVSFVASTEGGMDIEEVAASTPEKIVSFSVDPASGLSDFHGRRVAFALGLSGAQVKQCVALVKNLYRMFIEKDMEMLEINPLIVMKDGNLKALDAKMGFDNNALYRQ 236
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_GEOLS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=sucC PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41 Identity = 95/238 (39.92%), Postives = 141/238 (59.24%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739 +NIHEYQ E+++ YGI VP+ + D+V++A + + H VVK+QI AGGRG GGV +V E+ D+A ++ G+ LVTKQTGP+G V ++ + E + + E Y +I LDR+T+ +I ++GG IE++A+K P+ I + ID F G+ A K+ L A D +E + YK E DC+L+EINPL T L+A DAK++FDDNA +R + Y Sbjct: 1 MNIHEYQAKEILSTYGIPVPRNRVALTADQVERAAK-MMGGH--CVVKAQIYAGGRGKA-------GGVKLVHHPEQASDVAKELFGKRLVTKQTGPEGLKVRRILVEETVEIAREFYLSITLDRETSRYCLIASAEGGMDIEEVAQKSPDKIHVLTIDPFTGLRTYQARKIALALGLSGAVCEDCVELILNTYKCCLEKDCSLIEINPLVVTRAGWLLAMDAKISFDDNAVYRHREY 228
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLL2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=sucC PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41 Identity = 93/241 (38.59%), Postives = 145/241 (60.17%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742 +NIHEYQG +++ K+G++VP+G+ S DE K+A Q +F + +VVK+QI AGGRG GGV + K +E ++A +MLG LVT QTGP+GK VS++ + E +++ E Y I LDR T+ +++ ++GG IE +AE+ P+ ++K+ +D G+ A + L + +A+ + LY + D +L EINPL T +++A DAK+NFD NA FR K +L Sbjct: 1 MNIHEYQGKDILKKFGVSVPRGIVAFSPDEAKQAAQQLFEEQGSPVVVVKAQIHAGGRGKA-------GGVKLAKSPDEAMEIARQMLGATLVTHQTGPEGKQVSRLLVEEGMNIDREFYVGITLDRSTSRNVLMVSTEGGMEIEKVAEETPDKLLKIQVDPLYGLQGFQAREAAFFLGLEGEQFRNAVTFIIALYNAYMTIDASLAEINPLVVTKEGRVLALDAKINFDGNALFRHKNFL 234
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SULDN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=sucC PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 5.220e-41 Identity = 96/237 (40.51%), Postives = 139/237 (58.65%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRND---AIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ ++ AKYG+ PKGL SV + + + VVK+QI AGGRGLG GGV + + EEVE L+ ++LG LVT QTGP+GK+V K+Y+ E + E+Y ++LDR P+I+ ++GG +IED+A P I+K+ +D G ++V GL + D N+ I KLYKL+ E+D ++EINPL +T + +A D K+ FDD+A R Sbjct: 1 MNIHEYQAKQIFAKYGVPTPKGLMAESVKQAVANAETL--GGSIWVVKAQIHAGGRGLG-------GGVKLARSLEEVEQLSKEILGMTLVTHQTGPEGKLVQKLYIEEGADIKEELYLGVVLDRAREMPVIMASTEGGMAIEDVAHNTPEKIIKIAVDPAIGFQGFHGRELVFGLG--ITDPNEQKKLISFASKLYKLYMENDAEMIEINPLVKTGSGEFLALDGKMGFDDSALGR 226
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_EXISA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=sucC PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 6.818e-41 Identity = 96/239 (40.17%), Postives = 139/239 (58.16%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742 +NIHEYQ EL+ ++G+ VP G +V+E A + D + VVK+QI AGGRG GGV + K EEV+ A ++LG+ LVT QTGP+GK+V ++Y+ E ++ E Y ++LDR +I+G S+GG IE++AE P I K +D G+ A ++ + N+ + V KLYK++ E+DCT+ EINPL T ++A DAKLNFD NA +R L Sbjct: 1 MNIHEYQAKELLREFGVAVPTGYPAFTVEEAVAAAAKL--DGEVKVVKAQIHAGGRGKA-------GGVKLAKTDEEVKQYASEILGKTLVTHQTGPEGKVVQRLYIEEGSAIDQEFYLGLVLDRSIGRIVIMGSSEGGMDIEEVAEHTPEKIHKEIVDPVVGLRPFQARRLAFKMEVPTKLVNEFSDMVMKLYKVYVETDCTIAEINPLVTTKDGNVIALDAKLNFDSNALYRHSDIL 230 The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bpback to top |