FC875593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEDO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=sucC PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25 Identity = 79/237 (33.33%), Postives = 114/237 (48.10%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736 +N+HEYQ L A+YG+ V +G A + E +A + D VVK Q+ AGGRG GGV + K+E+ A LG+ LVT QT +G+ V+K+ + + NE+Y ++DR T + + ++GG IE +AE P +I ID G A + L + L +F + D LLEINPL T+ L D K+ D NA FRQ + Sbjct: 1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHIGGDM--WVVKCQVHAGGRGKA-------GGVKVTSSKDEIRAFAENWLGKNLVTYQTDAKGQPVAKILVESCTDIANELYLGAVVDRSTRRVVFMASTEGGVDIETVAEHTPELIHTAIIDPLTGPQAYQARDLGFKLGLNPTQMKQFTKIFMGLANMFNDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPK 228
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SACEN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=sucC PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25 Identity = 71/237 (29.96%), Postives = 119/237 (50.21%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736 ++++EYQ EL A +G+ G D K A + + +VVK+Q+ GGRG GGV + + +E + A +LG + +G I +V + +V+E YF+ +LDR + + +GG IE++A P + K+ ID G+ + A ++VD + +E V KL++ F D TL+EINPL + +++A D K+ D+NA+FRQ + Sbjct: 1 MDLYEYQAKELFASHGVPTLPGSVATDSDGAKAAAEQL---GGPVVVKAQVKTGGRGKA-------GGVKLAENPDEAKTKAEAILGLDI-------KGHITRRVLITTASDIVDEYYFSFLLDRANRNFLAMASVEGGMEIEEVAATKPEALAKIAIDPIQGVDEAKAREIVDAAKFPAEIADQVVEVVVKLWETFVAEDATLVEINPLVKDPQGKIIALDGKVTLDENASFRQPK 220
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit beta-1 OS=Archaeoglobus fulgidus GN=sucC1 PE=3 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25 Identity = 76/234 (32.48%), Postives = 124/234 (52.99%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + +HE+Q ++ AK+GI VP+G S +E +K + + +VVK+QIL GGRG GGV EE +++A K+LG + +G V KV + E+L++ E Y ++D+ + P +I GG +E++A K+P+ I ++ D G+ D + K + + + + +KKL + + L EINPLA T + +AADA+LN DDNA +R Sbjct: 1 MRLHEHQAKQIFAKHGIRVPRGEVATSPEEAEKIAEKL---GGRVVVKAQILVGGRGKA-------GGVKKANSPEEAKEVAKKILGMTI-------KGHRVEKVLVEEQLNMRKEYYVGYVVDKSSRLPTVIFSRMGGMDVEEIAAKHPDAIHRIYFDPLWGLKDYEVRKALFRAGFEGEEFKQMFDIIKKLVDIAFAYEAELTEINPLAVTD-EGFLAADARLNTDDNALYR 216
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEWM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=sucC PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25 Identity = 78/237 (32.91%), Postives = 115/237 (48.52%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736 +N+HEYQ L A+YG+ V +G A + E +A + D VVK Q+ AGGRG GGV + K E+ A LG+ LVT QT +G+ V+K+ + + NE+Y ++DR + + + ++GG IE +AE+ P +I K ID G A + L + L K+F + D LLEINPL T + D K+ D NA +RQ + Sbjct: 1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHIGGDM--WVVKCQVHAGGRGKA-------GGVKVTGDKNEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRASRRVVFMASTEGGVEIETVAEETPELIHKAIIDPLAGPQPYQARDLGFKLGLNPTQLKQFTKVFMGLAKMFEDHDFALLEINPLVITDEGNIHCLDGKIGIDGNALYRQPK 228
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS195) GN=sucC PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25 Identity = 78/237 (32.91%), Postives = 114/237 (48.10%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736 +N+HEYQ L A+YG+ V +G A + E +A + VVK Q+ AGGRG GGV + KEE+ A LG+ LVT QT +G+ V+K+ + + NE+Y ++DR T + + ++GG IE +AE+ P +I ID G A + L + L +F + D LLEINPL T+ L D K+ D NA +RQ + Sbjct: 1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHTAIIDPLTGPQGYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALYRQPK 228
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS185) GN=sucC PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25 Identity = 78/237 (32.91%), Postives = 114/237 (48.10%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736 +N+HEYQ L A+YG+ V +G A + E +A + VVK Q+ AGGRG GGV + KEE+ A LG+ LVT QT +G+ V+K+ + + NE+Y ++DR T + + ++GG IE +AE+ P +I ID G A + L + L +F + D LLEINPL T+ L D K+ D NA +RQ + Sbjct: 1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHTAIIDPLTGPQGYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALYRQPK 228
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=sucC PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25 Identity = 78/237 (32.91%), Postives = 114/237 (48.10%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736 +N+HEYQ L A+YG+ V +G A + E +A + VVK Q+ AGGRG GGV + KEE+ A LG+ LVT QT +G+ V+K+ + + NE+Y ++DR T + + ++GG IE +AE+ P +I ID G A + L + L +F + D LLEINPL T+ L D K+ D NA +RQ + Sbjct: 1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHTAIIDPLTGPQGYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALYRQPK 228
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS223) GN=sucC PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25 Identity = 78/237 (32.91%), Postives = 114/237 (48.10%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736 +N+HEYQ L A+YG+ V +G A + E +A + VVK Q+ AGGRG GGV + KEE+ A LG+ LVT QT +G+ V+K+ + + NE+Y ++DR T + + ++GG IE +AE+ P +I ID G A + L + L +F + D LLEINPL T+ L D K+ D NA +RQ + Sbjct: 1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHTAIIDPLTGPQGYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALYRQPK 228
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PYRAE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pyrobaculum aerophilum GN=sucC PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.016e-25 Identity = 68/236 (28.81%), Postives = 123/236 (52.12%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPK--VADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + +HEY+ EL +KYG+ +P G + +EV K +++ +V+K+Q++ GRG GG+ + EE +L+ +M G + +G IV K+Y+ + + + EMY ++++DR + + + GG IE++A+ P I +V +D G+ D +V L K + A V+ +Y++ + D L+E NPLA T +++ DA++ DDNA F+ Sbjct: 1 MKLHEYEAKELFSKYGVKIPPGKVALTPEEVLKIAREI---GAPVVLKAQVVVAGRGKA-------GGIKVANSPEEAYELSKRMFGMNI-------KGLIVKKLYVTKFVEVEREMYLSLIIDRASRRYLFLASPVGGMDIEEIAKTSPEKIKRVYVDPATGLRDYHVRSIVSWLGFKQGTSQWQQAASIVQAMYRIMVDYDAELVESNPLAVTKEGEVIPLDARVIVDDNALFK 219
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEFN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella frigidimarina (strain NCIMB 400) GN=sucC PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25 Identity = 78/237 (32.91%), Postives = 113/237 (47.68%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736 +N+HEYQ L A+YG+ V +G A + E +A + VVK Q+ AGGRG GGV + K+E+ A LG+ LVT QT +G+ V+K+ + + NE+Y ++DR T + + ++GG IE +AE P +I ID G A + L + L +F + D LLEINPL T+ L D K+ D NA FRQ + Sbjct: 1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGNKDEIRAFAENWLGKNLVTYQTDAKGQPVAKILVESCTDIANELYLGAVVDRSTRRVVFMASTEGGVDIETVAEHTPELIHTAIIDPLTGPQAFQARDLGFKLGLNPTQMKQFTKIFMGLANMFNDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPK 228 The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bpback to top |