FC875601

Overview
NameFC875601
Unique NameFC875601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 53/182 (29.12%), Postives = 91/182 (50.00%), Query Frame = 2
Query:  122 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA 667
            + + HE+ V ++ + P+ E    ++++GS D T+K+W  +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  +  G  D  I V+ ++ A
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVE-SPINQIAFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDA 311          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 53/182 (29.12%), Postives = 91/182 (50.00%), Query Frame = 2
Query:  122 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA 667
            + + HE+ V ++ + P+ E    ++++GS D T+K+W  +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  +  G  D  I V+ ++ A
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVE-SPINQIAFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDA 311          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 62/224 (27.68%), Postives = 100/224 (44.64%), Query Frame = 2
Query:    8 KPRQEGTTKQTTQKDPHNSRKFVGLCPPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCI 679
            KP  E    Q T        K   + P   +KF         H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D T +  C+
Sbjct:    7 KPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLA-----GHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCL 206          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 62/224 (27.68%), Postives = 100/224 (44.64%), Query Frame = 2
Query:    8 KPRQEGTTKQTTQKDPHNSRKFVGLCPPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCI 679
            KP  E    Q T        K   + P   +KF         H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D T +  C+
Sbjct:    7 KPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLA-----GHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCL 206          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 62/224 (27.68%), Postives = 100/224 (44.64%), Query Frame = 2
Query:    8 KPRQEGTTKQTTQKDPHNSRKFVGLCPPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCI 679
            KP  E    Q T        K   + P   +KF         H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D T +  C+
Sbjct:    7 KPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLA-----GHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCL 206          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 62/224 (27.68%), Postives = 100/224 (44.64%), Query Frame = 2
Query:    8 KPRQEGTTKQTTQKDPHNSRKFVGLCPPNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCI 679
            KP  E    Q T        K   + P   +KF         H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD  T   + TL    P    P         V +V ++ DG  I   S DG   ++D T +  C+
Sbjct:    7 KPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLA-----GHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWD-TASGQCL 206          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: TUP1_DICDI (General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 53/158 (33.54%), Postives = 76/158 (48.10%), Query Frame = 2
Query:  194 LLTGSLDETVKLWRPDD----MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFD 655
            +++GS D+  K+W  +       L     G   GV SVA  P G + A+ SLD+ VR++D  T   +   E     V+ + F P G +LA +G    S+KLWD         LS  R         +  K FVLSVA+SPDG  +  GS D ++  +D
Sbjct:  384 IVSGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQTGYFLERYEGHLDSVYSVAFSPDGKSLA-SGSLDKSLKLWD---------LSGSRSRSRCRATFNGHKDFVLSVAFSPDGSWLISGSKDRSVQFWD 531          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 53/182 (29.12%), Postives = 91/182 (50.00%), Query Frame = 2
Query:  122 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRA 667
            + + HE+ V ++ + P+ E    ++++GS D T+K+W  +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  +  G  D  I V+ ++ A
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVE-SPINQIGFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDA 311          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_DROME (Guanine nucleotide-binding protein subunit beta-like protein OS=Drosophila melanogaster GN=Rack1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.395e-13
Identity = 56/179 (31.28%), Postives = 90/179 (50.28%), Query Frame = 2
Query:  125 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 661
            E+ H + V  V + P   + P ++  G  D TVK+W   + +L+  + GH   + +V   P G +  S   DS   ++D++   ++ TLE +   +  + F P    L VA G   S+K+WD A    +  L   RPE + PT K+   +  LS+AWS DG+ +  G  D TI V+ V+
Sbjct:  145 EDGHTDWVSCVRFSP-NHSNPIIVSCG-WDRTVKVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSGGKDSKALLWDLNDGKNLYTLEHN-DIINALCFSPNRYWLCVAYG--PSIKIWDLACKKTVEEL---RPEVVSPTSKADQPQ-CLSLAWSTDGQTLFAGYSDNTIRVWQVS 314          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.127e-13
Identity = 55/186 (29.57%), Postives = 92/186 (49.46%), Query Frame = 2
Query:  122 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCI 679
            + NAH++S+  + + P        + +GS D ++K+WR D +  E+T  GH LG+   +      +  S S D  V+VFDV +   + TL+   + V+   F+P GT +A +G    ++++W     N I   SIP  E             V SV ++ DG  +A GS DG + ++D T   +C+
Sbjct:  102 IPNAHKKSISGIKFSPDGR----YMGSGSADCSIKIWRMDFVY-EKTLMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIA-SGSFDETIRIWCARNGNTI--FSIPGHEDP-----------VSSVCFNRDGAYLASGSYDGIVRIWDST-TGTCV 267          
The following BLAST results are available for this feature:
BLAST of FC875601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
GBLP_LEIIN1.833e-1329.12Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH1.833e-1329.12Guanine nucleotide-binding protein subunit beta-li... [more]
WDR5_RAT2.395e-1327.68WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE2.395e-1327.68WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN2.395e-1327.68WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN2.395e-1327.68WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
TUP1_DICDI2.395e-1333.54General transcriptional corepressor tupA OS=Dictyo... [more]
GBLP_LEIMA2.395e-1329.12Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_DROME2.395e-1331.28Guanine nucleotide-binding protein subunit beta-li... [more]
YZLL_CAEEL3.127e-1329.57Uncharacterized WD repeat-containing protein K04G1... [more]

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Properties
Property NameValue
Genbank descriptionC31405G03EF CTVClemen1 Citrus clementina cDNA clone C31405G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875601 ID=FC875601; Name=FC875601; organism=Citrus clementina; type=EST; length=705bp
AACTTCAAAACCTCGACAGGAGGGGACCACCAAACAAACCACACAAAAAG
ATCCTCACAATTCACGCAAATTTGTAGGGTTGTGTCCACCAAACCAAATG
AAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACGAGGAGTCAGTATG
GGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCGGCGCTCTTGCTGA
CGGGATCGTTGGACGAGACCGTGAAGCTGTGGCGGCCCGACGACATGCAG
CTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAGTCTCTGTGGCAGC
GCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTCGACAGCTTTGTTC
GAGTATTTGATGTCGACACCAACGCCTCTATTGCTACTCTCGAAGCTTCT
CCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGGGTACCACTCTAGC
TGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGGGACACAGCCACTT
GGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGAAGGACTGAAGCCG
ACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAGTTGCATGGAGTCC
TGATGGCAGACGAATTGCTTGTGGTTCAATGGATGGCACAATTTCTGTTT
TTGATGTTACCCGTGCCAATTCCTGCATCATCTGGAAGGCCATTTCATGC
CTGTG
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