FC875601

Overview
NameFC875601
Unique NameFC875601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:86..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 54/184 (29.35%), Postives = 86/184 (46.74%), Query Frame = 2
Query:  128 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCI 679
            + H ++V AV + P      +LL +GS D TV LW         T  GH  GV  VA +P+G   A+A+ D  ++++D +T A + TL    + V+   FD     L  +G    +++LWD  +   +  +    P    P         V S A+S DG  +   S+DG I ++D T+   C+
Sbjct:   37 SGHTKAVAAVKFSPDG----SLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVRSGRCLREV----PAHSDP---------VTSAAFSYDGSMVVTSSLDGLIRLWD-TQTGHCL 202          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: TUP1_CANAL (Transcriptional repressor TUP1 OS=Candida albicans GN=TUP1 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 45/136 (33.09%), Postives = 67/136 (49.26%), Query Frame = 2
Query:  254 ERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 661
            + T     L + SV   P G + A+ + D  +R++D+ T   I  L     +++ + F P G  L V+G G  SV++WD  T     TLSI              +  V +VA SPDG+ IA GS+D T+ V+D T
Sbjct:  250 DNTTASGDLYIRSVCFSPDGKLLATGAEDKLIRIWDLSTKRIIKILRGHEQDIYSLDFFPDGDRL-VSGSGDRSVRIWDLRTSQCSLTLSI--------------EDGVTTVAVSPDGKLIAAGSLDRTVRVWDST 370          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: KTNB1_ARATH (Katanin p80 WD40 repeat-containing subunit B1 homolog 1 OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.898e-12
Identity = 49/175 (28.00%), Postives = 83/175 (47.43%), Query Frame = 2
Query:  134 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 658
            H   + +VT+    +    L+  G+   T+KLW  ++ ++ RT TGH    +SV  HP G   AS SLD+ ++++D+     I T +     V  ++F P G  + V+GG    VK+WD     L+             T+  S +  + S+ + P    +A GS D T+  +D+
Sbjct:   58 HSSGIDSVTF----DASEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWV-VSGGEDNIVKVWDLTAGKLL-------------TEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDL 214          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.703e-12
Identity = 49/179 (27.37%), Postives = 87/179 (48.60%), Query Frame = 2
Query:  125 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 661
            ++ H +    V + P T+    ++++   D  VK+W   + +L+  + GH   V +V   P G + AS   DS   ++D++    + TL+ +   +  + F P    L VA G   S+K+WD     ++  L   +PE +  T K+ +    LS+AWS DG+ +  G  D  I V+ V+
Sbjct:  144 DDCHTDWTSCVRFSPNTQN--PIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLYTLDGAGDTINALCFSPNRYWLCVASG--PSIKIWDLEGKVVVDEL---KPEVMGTTSKAPT---CLSLAWSADGQTLFAGYTDKLIRVWQVS 312          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 52/194 (26.80%), Postives = 91/194 (46.91%), Query Frame = 2
Query:  113 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL-------GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANS 673
            ++ V + HE+ ++++ +          +++GS D T +LW  +        TG C+       GV ++A  P+    A  SLD  +RV+ V +   +  LE     V+ + F P  + L ++G    ++K+W+      +  LS  +PEG+     +    FVLSVA SPD R    GS D ++  +D+    S
Sbjct:  394 VRYVFSGHEQDIYSLDF----SHNGRFIVSGSGDRTARLWDVE--------TGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIRVWSV-SGTLVERLEGHKESVYSIAFSPDSSIL-LSGSLDKTIKVWELQATRSVG-LSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQTGQS 572          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: YH92_CAEEL (Uncharacterized WD repeat-containing protein ZC302.2 OS=Caenorhabditis elegans GN=ZC302.2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 54/197 (27.41%), Postives = 97/197 (49.24%), Query Frame = 2
Query:   89 PNQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCI 679
            P   +F+ +K++ + H +SV  + +    +     L TGS D+ +K+W   DM   +T   H LG+   +   +    ASAS D+ V++FDV + A + T+    + V+   F+P+ + +A A G   +V++WD  T   +  +    P    P         + S++++ DG  +A  S DG I V+D   + SC+
Sbjct:  198 PENGEFSLVKTI-SGHTKSVSVIKFSYCGK----YLGTGSADKQIKVWNTVDMTYLQTLASHQLGINDFSWSSNSQFIASASDDTTVKIFDVISGACLRTMRGHTNYVFCCSFNPQSSLIASA-GFDETVRVWDFKTGLCVKCI----PAHSDP---------ITSISYNHDGNTMATSSYDGCIRVWDAA-SGSCL 374          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: WDR69_HUMAN (WD repeat-containing protein 69 OS=Homo sapiens GN=WDR69 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 50/167 (29.94%), Postives = 79/167 (47.31%), Query Frame = 2
Query:  188 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCIIWK 688
            +L+LTGS+D+T KLW   + +   T TGH   ++      +G + A+AS D   R+F   T   IA LE    E+ ++ F+P+G  L + G    + ++WD  T   +  L     EG   TD+      + S A++  G  +  GS D           N+C IW+
Sbjct:  274 SLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHL-LTGSSDKTARIWDAQTGQCLQVL-----EG--HTDE------IFSCAFNYKGNIVITGSKD-----------NTCRIWR 415          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: WDR61_DICDI (WD repeat-containing protein 61 homolog OS=Dictyostelium discoideum GN=wdr61 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 49/184 (26.63%), Postives = 83/184 (45.11%), Query Frame = 2
Query:  116 KSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLW---RPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 658
            K +  AHE+ +W V W      +  ++ TG +   VK W   +P  +   +    H LGV S+         A+  +D  VR+FD+ TN    T+++ P    ++ F      L V+   S ++ ++   T             G K    S++ K VL++A SP+  +IA   +DGT+  +DV
Sbjct:    6 KKITGAHEDGIWCVKW------QGDIIATGGMGTKVKTWHGNQPQFLTERKVFDKHILGVTSLDIDIGARYLATGGMDGTVRLFDLSTNTLHKTIDSGPLGCLKIGFLNSANNL-VSVSESGNISIYSVET-------------GEKLRSISNTNKQVLTMAISPNNEQIAVAGLDGTVLCYDV 169          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_MEDSA (Guanine nucleotide-binding protein subunit beta-like protein OS=Medicago sativa GN=GB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 50/184 (27.17%), Postives = 88/184 (47.83%), Query Frame = 2
Query:  128 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSI---PRPEGLKPTDKSSSKK--FVLSVAWSPDGRRIACGSMDGTISVFDVTR 664
            +AH + V  V + P+T      +++ S D TVK+W   + +L  T  GH   V +VA  P G + AS   D  + ++D+     + +L+A  S +  + F P    L  A    +S+K+WD  + +++  L +      +     D ++ KK  +  S+ WS DG  +  G  DG + V+ + R
Sbjct:  146 DAHSDWVSCVRFSPSTPQ--PTIVSASWDRTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-SIIHALCFSPNRYWLCAA--TESSIKIWDLESKSIVEDLKVDLKTEADAAIGGDTTTKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGR 324          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: SEL10_CAEEL (F-box/WD repeat-containing protein sel-10 OS=Caenorhabditis elegans GN=sel-10 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 52/157 (33.12%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  194 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTR 664
            +++GS D TVK+W   D  L  T  GH   V  +A   +G I  + S D+ +RV+DV++   +ATL    + V  +QFD  GTT+ V+GG   +VK+W+  T   I TL             +     V S+ +  +   +  GS+D +I V+D TR
Sbjct:  311 IVSGSTDRTVKVWSTVDGSLLHTLQGHTSTVRCMAM--AGSILVTGSRDTTLRVWDVESGRHLATLHGHHAAVRCVQFD--GTTV-VSGGYDFTVKIWNAHTGRCIRTL-------------TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTR 449          
The following BLAST results are available for this feature:
BLAST of FC875601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
MUT11_CHLRE2.648e-1229.35Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
TUP1_CANAL4.516e-1233.09Transcriptional repressor TUP1 OS=Candida albicans... [more]
KTNB1_ARATH5.898e-1228.00Katanin p80 WD40 repeat-containing subunit B1 homo... [more]
GBLP_BIOGL7.703e-1227.37Guanine nucleotide-binding protein subunit beta-2-... [more]
TUP11_SCHPO1.006e-1126.80Transcriptional repressor tup11 OS=Schizosaccharom... [more]
YH92_CAEEL1.314e-1127.41Uncharacterized WD repeat-containing protein ZC302... [more]
WDR69_HUMAN1.314e-1129.94WD repeat-containing protein 69 OS=Homo sapiens GN... [more]
WDR61_DICDI1.314e-1126.63WD repeat-containing protein 61 homolog OS=Dictyos... [more]
GBLP_MEDSA1.314e-1127.17Guanine nucleotide-binding protein subunit beta-li... [more]
SEL10_CAEEL1.716e-1133.12F-box/WD repeat-containing protein sel-10 OS=Caeno... [more]

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Properties
Property NameValue
Genbank descriptionC31405G03EF CTVClemen1 Citrus clementina cDNA clone C31405G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875601 ID=FC875601; Name=FC875601; organism=Citrus clementina; type=EST; length=705bp
AACTTCAAAACCTCGACAGGAGGGGACCACCAAACAAACCACACAAAAAG
ATCCTCACAATTCACGCAAATTTGTAGGGTTGTGTCCACCAAACCAAATG
AAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACGAGGAGTCAGTATG
GGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCGGCGCTCTTGCTGA
CGGGATCGTTGGACGAGACCGTGAAGCTGTGGCGGCCCGACGACATGCAG
CTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAGTCTCTGTGGCAGC
GCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTCGACAGCTTTGTTC
GAGTATTTGATGTCGACACCAACGCCTCTATTGCTACTCTCGAAGCTTCT
CCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGGGTACCACTCTAGC
TGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGGGACACAGCCACTT
GGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGAAGGACTGAAGCCG
ACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAGTTGCATGGAGTCC
TGATGGCAGACGAATTGCTTGTGGTTCAATGGATGGCACAATTTCTGTTT
TTGATGTTACCCGTGCCAATTCCTGCATCATCTGGAAGGCCATTTCATGC
CTGTG
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