FC875601

Overview
NameFC875601
Unique NameFC875601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:86..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 52/183 (28.42%), Postives = 87/183 (47.54%), Query Frame = 2
Query:  134 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 664
            H + V  V + P   T    +++ S D+TVK+W   + +L  T  GH   V +VA  P G + AS   D  V ++D+     + +LEA+ S +  + F P    L  A      +K+WD  + +++  L +      +  D S   ++K+ V+   S+ WS DG  +  G  DG I V+ + R
Sbjct:  149 HRDWVSCVRFSP--NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSPNRYWLCAA--TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 326          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 2
Query:  134 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 658
            H E V  V + P T T P ++++G  D+ VK+W   + +L+    GH   V +V   P G + AS   D    ++D+     + +L+A    +  + F P    L  A    +S+K+WD  + +++  L   RPE    T K +   + +S+AWS DG  +  G  DG I V+ V
Sbjct:  149 HTEWVSCVRFSPMT-TNP-IIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDAG-DVIHCLCFSPNRYWLCAA--TQSSIKIWDLESKSIVDDL---RPE-FNITSKKAQVPYCVSLAWSADGSTLYSGYTDGQIRVWAV 314          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 56/181 (30.94%), Postives = 75/181 (41.44%), Query Frame = 2
Query:  134 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSC 676
            H   VW V   P +        +GS D T +LW  D     R   GH   V  V  HP+    A+ S D  VR++      S+         V  + F P G  LA A G    +KLWD A+  L   L          TD       + S+A+SPD   IA  SMD ++ V+D+ R+  C
Sbjct:  383 HAYPVWDVDISPFS----LYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASA-GEDQRLKLWDLASGTLFKELR-------GHTDS------ITSLAFSPDSGLIASASMDNSVRVWDI-RSTCC 544          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 54/183 (29.51%), Postives = 79/183 (43.17%), Query Frame = 2
Query:  134 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCII 682
            H+E    V + P  +     L T S D T KLW+ D   L+ T  GH   +  VA HPSG    + S D   R++D++T A +   E     V+ + F   G  LA + G  +  ++WD  T   I          +KP         V SV +SP+G  +A G  D    ++D+    S  I
Sbjct:  297 HKERATDVVFSPVDDC----LATASADRTAKLWKTDGTLLQ-TFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDG-ALAASCGLDSLARVWDLRTGRSILVFQ----GHIKP---------VFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYI 460          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  185 PALLLTGSLDETVKLWRP-DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 652
            P  L++GS D T+ LW P +D +     TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L              TD       V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVKAQKL-------------ATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 51/184 (27.72%), Postives = 91/184 (49.46%), Query Frame = 2
Query:  128 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP-RPEGLKPTDKSSSKK----FVLSVAWSPDGRRIACGSMDGTISVFDVTR 664
            ++H + V  V + P    +P ++ +GS D TVK+W   + +L  T  GH   V + A  P G + AS   D  + ++D+     + +LE S S +  + F P    L  A    +S+K+WD  + +++  L +  + E    ++ ++S K    +  S++WS DG  +  G  DG I V+ + R
Sbjct:  147 DSHSDWVSCVRFSP-NNLQPTIV-SGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLE-SGSIIHSLCFSPNRYWLCAA--TESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKVIYCTSLSWSADGSTLFSGYTDGLIRVWGIDR 325          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 52/183 (28.42%), Postives = 87/183 (47.54%), Query Frame = 2
Query:  134 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 664
            H + V  V + P   T    +++ S D+TVK+W   + +L  T  GH   V +VA  P G + AS   D  V ++D+     + +LEA+ S +  + F P    L  A      +K+WD  +  ++  L +      + +D S   ++K+ V+   S+ WS DG  +  G  DG I V+ + R
Sbjct:  149 HRDWVSCVRFSP--NTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFTPNRYWLCAA--TEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 326          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: WDR69_RAT (WD repeat-containing protein 69 OS=Rattus norvegicus GN=Wdr69 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 43/162 (26.54%), Postives = 76/162 (46.91%), Query Frame = 2
Query:  194 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCI 679
            + TGS D+T KLW  +  +   T  GH   +V ++ +P   + A+ S+D+  +++D+ +   + TL    +E+  + FD  G  + + G    +V +WD +T   + TL     E             + S  +S D   I  GSMD T  ++D T +  C+
Sbjct:  150 IATGSFDKTCKLWSAETGKCYHTFRGHTAEIVCLSFNPQSTVVATGSMDTTAKLWDIQSGEEVVTLTGHLAEIISLSFDTSGDRI-ITGSFDHTVVVWDASTGRKVHTLIGHCAE-------------ISSALFSWDCSLILTGSMDKTCMLWDAT-SGKCV 296          

HSP 2 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 49/167 (29.34%), Postives = 77/167 (46.11%), Query Frame = 2
Query:  188 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCIIWK 688
            +L+LTGS+D+T  LW     +   T TGH   ++      +G + A+AS D   RV++  T   I  LE    E+ ++ F+P+G  L + G    + ++WD  T   +  L     EG   TD+      + S A++  G  +  GS D           NSC IW+
Sbjct:  274 SLILTGSMDKTCMLWDATSGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARVYNATTRKCITKLEGHEGEISKISFNPQGNRL-LTGSSDKTARIWDVQTGQCLQVL-----EG--HTDE------IFSCAFNYKGNIVITGSKD-----------NSCRIWR 415          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  185 PALLLTGSLDETVKLWRP-DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 652
            P  L++GS D T+ LW P +D +     TGH   +  V   P   + ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L              TD       V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVKAQKL-------------STDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 2
Query:  128 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP-RPEGLKPTDKSSSKK----FVLSVAWSPDGRRIACGSMDGTISVFDVTR 664
            ++H + V  V + P    +P ++ +GS D TVK+W   + +L  T  GH   V + A  P G + AS   D  + ++D+     + +LE S S +  + F P    L  A    +S+K+WD  +  ++  L +  + E     + ++S K    +  S+ WS DG  +  G  DG I V+ + R
Sbjct:  147 DSHSDWVSCVRFSP-NNLQPTIV-SGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLE-SGSIIHSLCFSPNRYWLCAA--TESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKVIYCTSLGWSADGSTLFSGYTDGLIRVWGIGR 325          
The following BLAST results are available for this feature:
BLAST of FC875601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
GBLP_ARATH1.716e-1128.42Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_CHLRE2.241e-1129.71Guanine nucleotide-binding protein subunit beta-li... [more]
TAF5L_MOUSE2.927e-1130.94TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
PRP4_ARATH2.927e-1129.51U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]
NLE1_MOUSE2.927e-1129.94Notchless protein homolog 1 OS=Mus musculus GN=Nle... [more]
GBLP_TOBAC2.927e-1127.72Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA2.927e-1128.42Guanine nucleotide-binding protein subunit beta-li... [more]
WDR69_RAT3.823e-1126.54WD repeat-containing protein 69 OS=Rattus norvegic... [more]
NLE1_BOVIN3.823e-1129.30Notchless protein homolog 1 OS=Bos taurus GN=NLE1 ... [more]
GBLP_NICPL3.823e-1127.72Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionC31405G03EF CTVClemen1 Citrus clementina cDNA clone C31405G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875601 ID=FC875601; Name=FC875601; organism=Citrus clementina; type=EST; length=705bp
AACTTCAAAACCTCGACAGGAGGGGACCACCAAACAAACCACACAAAAAG
ATCCTCACAATTCACGCAAATTTGTAGGGTTGTGTCCACCAAACCAAATG
AAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACGAGGAGTCAGTATG
GGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCGGCGCTCTTGCTGA
CGGGATCGTTGGACGAGACCGTGAAGCTGTGGCGGCCCGACGACATGCAG
CTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAGTCTCTGTGGCAGC
GCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTCGACAGCTTTGTTC
GAGTATTTGATGTCGACACCAACGCCTCTATTGCTACTCTCGAAGCTTCT
CCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGGGTACCACTCTAGC
TGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGGGACACAGCCACTT
GGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGAAGGACTGAAGCCG
ACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAGTTGCATGGAGTCC
TGATGGCAGACGAATTGCTTGTGGTTCAATGGATGGCACAATTTCTGTTT
TTGATGTTACCCGTGCCAATTCCTGCATCATCTGGAAGGCCATTTCATGC
CTGTG
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