FC875601

Overview
NameFC875601
Unique NameFC875601
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:86..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: SWD3_SCHPO (Set1 complex component swd3 OS=Schizosaccharomyces pombe GN=swd3 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 52/175 (29.71%), Postives = 80/175 (45.71%), Query Frame = 2
Query:  134 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 658
            HE+SV  V+  P        + T S D T+K+W     +LE T  GH  G+  V         ASAS D  +R++D +   S+  L+   + V  + F+P G TL V+G    +V++W+      +  L    P   +P         ++SV+ S DG   A  S DG   ++DV
Sbjct:   53 HEKSVTCVSVSP----NKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLG-TLLVSGSWDETVRIWNLQDGTCLRML----PAHSEP---------IISVSISADGTLCATASYDGMARIWDV 209          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: WDR69_BOVIN (WD repeat-containing protein 69 OS=Bos taurus GN=WDR69 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 49/167 (29.34%), Postives = 78/167 (46.71%), Query Frame = 2
Query:  188 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRANSCIIWK 688
            +L+LTGS+D+T KLW   + +   T TGH   ++      +G + A+AS D   R+F   T   +  LE    E+ ++ F+P+G  L + G    + ++WD  T   +  L     EG   TD+      + S A++  G  I  GS D           N+C IW+
Sbjct:  274 SLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRL-LTGSSDKTARIWDAQTGQCLQVL-----EG--HTDE------IFSCAFNYKGDIIITGSKD-----------NTCRIWR 415          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: NLE1_PONAB (Notchless protein homolog 1 OS=Pongo abelii GN=NLE1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  185 PALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 652
            P  L++GS D T+ LW P + +   T  TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L   L     E             V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADE-------------VYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: NLE1_HUMAN (Notchless protein homolog 1 OS=Homo sapiens GN=NLE1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  185 PALLLTGSLDETVKLWRPDDMQLERTN-TGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 652
            P  L++GS D T+ LW P + +   T  TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L   L     E             V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLTRMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVKAQKLAMDLPGHADE-------------VYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of FC875601 vs. ExPASy Swiss-Prot
Match: GBLP_CAEEL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Caenorhabditis elegans GN=rack-1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.517e-11
Identity = 48/179 (26.82%), Postives = 82/179 (45.81%), Query Frame = 2
Query:  125 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEASPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 661
            ++ H + V  V + P+   R  ++++   D+ VK+W   + +L+  + GH   V +V   P G + AS   D    ++D++    + TL  +   +  M F P    L  A G  +S+K+WD      I  L   +PE         S    +S+AWS DG+ +  G  D  I V+ V+
Sbjct:  150 DDCHTDWVSTVRFSPSN--RDPVIVSAGWDKVVKVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLPGN-DVINAMSFSPNRYWLCAAVG--SSIKIWDLEDKKEIEEL---KPEIASSGSSRGSSPQCISLAWSQDGQTLFAGYTDNIIRVYQVS 320          
The following BLAST results are available for this feature:
BLAST of FC875601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SWD3_SCHPO4.993e-1129.71Set1 complex component swd3 OS=Schizosaccharomyces... [more]
WDR69_BOVIN8.517e-1129.34WD repeat-containing protein 69 OS=Bos taurus GN=W... [more]
NLE1_PONAB8.517e-1129.94Notchless protein homolog 1 OS=Pongo abelii GN=NLE... [more]
NLE1_HUMAN8.517e-1129.94Notchless protein homolog 1 OS=Homo sapiens GN=NLE... [more]
GBLP_CAEEL8.517e-1126.82Guanine nucleotide-binding protein subunit beta-2-... [more]

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Properties
Property NameValue
Genbank descriptionC31405G03EF CTVClemen1 Citrus clementina cDNA clone C31405G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875601 ID=FC875601; Name=FC875601; organism=Citrus clementina; type=EST; length=705bp
AACTTCAAAACCTCGACAGGAGGGGACCACCAAACAAACCACACAAAAAG
ATCCTCACAATTCACGCAAATTTGTAGGGTTGTGTCCACCAAACCAAATG
AAATTTGCTGGTCTAAAATCAGTCGAGAACGCGCACGAGGAGTCAGTATG
GGCGGTCACGTGGGTACCGGCGACCGAGACTCGACCGGCGCTCTTGCTGA
CGGGATCGTTGGACGAGACCGTGAAGCTGTGGCGGCCCGACGACATGCAG
CTGGAGCGGACCAACACTGGCCACTGTTTGGGCGTAGTCTCTGTGGCAGC
GCACCCGTCTGGTATTATAGCTGCCTCTGCTTCTCTCGACAGCTTTGTTC
GAGTATTTGATGTCGACACCAACGCCTCTATTGCTACTCTCGAAGCTTCT
CCTTCTGAAGTCTGGCAAATGCAGTTCGATCCTAAGGGTACCACTCTAGC
TGTTGCTGGAGGGGGTAGTGCATCTGTAAAGCTCTGGGACACAGCCACTT
GGAATCTGATTGCCACCCTGTCAATTCCTCGTCCAGAAGGACTGAAGCCG
ACAGATAAAAGTAGCAGCAAGAAGTTTGTTCTATCAGTTGCATGGAGTCC
TGATGGCAGACGAATTGCTTGTGGTTCAATGGATGGCACAATTTCTGTTT
TTGATGTTACCCGTGCCAATTCCTGCATCATCTGGAAGGCCATTTCATGC
CTGTG
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