FC875602

Overview
NameFC875602
Unique NameFC875602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10220 contig Ccv1_Contig10220:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GL1_PONAB (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Pongo abelii GN=B3GALNT1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 57/192 (29.69%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKDTG 707
            LR +    H+   L I V S  ++ K R A+R TW +        V   F +G     +++++   L +E   YGDI    F+D YN +T KT+    + T+   +AK+VMKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++S D+   +Y+  G
Sbjct:   67 LREHSNCSHQNPFLVILVTSHPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQEAEKEDKMLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNAKYVMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFYQKTHISYQEYPFKVFPPYCSGLGYIMSRDLVPRIYEMMG 258          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GL1_HUMAN (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B3GALNT1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.525e-15
Identity = 57/192 (29.69%), Postives = 95/192 (49.48%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKDTG 707
            LR +    H+   L I V S  ++ K R A+R TW +        V   F +G     +++++   L +E   YGDI    F+D YN +T KT+    + T+   +AK+VMKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++S D+   +Y+  G
Sbjct:   67 LREHSNCSHQNPFLVILVTSHPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQEAEKEDKMLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNAKYVMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFYQKTHISYQEYPFKVFPPYCSGLGYIMSRDLVPRIYEMMG 258          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN5_XENTR (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 OS=Xenopus tropicalis GN=b3gnt5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 57/188 (30.32%), Postives = 96/188 (51.06%), Query Frame = 3
Query:  168 HKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVGLH----KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFG---TDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY-GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            ++ V L + V ++  N +RR A+R+TW     +RS     + V F +G+     K+     +L  E + + D+    F D ++ +T K L    FG   +   SAKF+M  DDD FV    +++ LK + + +   + G ++  S P R+  SK+Y+  E +P  +YP +  G  YVVS D+   VY+
Sbjct:   84 NEDVLLLLFVKTSPENRRRRNAIRKTWGNEDYIRSQYAANIKVVFALGIEADPVKSHQTQKDLVIENKRFNDLIQQDFKDTFHNLTLKLLLQ--FGWVNSYCPSAKFIMSADDDIFVHTPNLVSYLKSLPIETQDFWIGRVHRGSPPIRSKTSKYYVPYEMYPWSSYPDYTAGAAYVVSKDVAAKVYE 269          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GL1_PIG (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Sus scrofa GN=B3GALNT1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 54/189 (28.57%), Postives = 93/189 (49.21%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            LR +    H+   L I V S   + K R A+R TW +        V   F +G     +++++   L +E   YGDI    F+D YN +T KT+    + T+   +A+++MKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++S D+   +Y+
Sbjct:   67 LREHSNCSHQNPFLVILVTSHPADVKARQAIRVTWGEKKSWWGYEVLTFFLLGQQAEREDKVLALSLEDEHLLYGDIIRQDFLDTYNNLTLKTIMAFRWVTEFCPNARYIMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFYQKTHISYQEYPFKVFPPYCSGLGYIMSRDLVPRIYE 255          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN5_HUMAN (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 OS=Homo sapiens GN=B3GNT5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 58/183 (31.69%), Postives = 86/183 (46.99%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVG----LHKNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVD---EVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            L + V +   N+ RR  +RRTW     VRS     +   F +G    L   ++     W + R Y DI    FVD +YNL     +      T    AKF+M  DDD F+ +    E L SL++I V    + G ++  + P R+  SK+Y+S E +    YP +  G  YV+S D+   VY+
Sbjct:   90 LLLFVKTAPENYDRRSGIRRTWGNENYVRSQLNANIKTLFALGTPNPLEGEELQRKLAWEDQR-YNDIIQQDFVDSFYNLTLKLLMQFSWANTYCPHAKFLMTADDDIFIHMPNLIEYLQSLEQIGVQDFWI-GRVHRGAPPIRDKSSKYYVSYEMYQWPAYPDYTAGAAYVISGDVAAKVYE 270          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GL1_RAT (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Rattus norvegicus GN=B3galnt1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 54/179 (30.17%), Postives = 89/179 (49.72%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKDTG 707
            L I V S  ++ K R A+R TW +        V   F +G     +++++   L +E   YGDI    F+D YN +T KT+    +  +   +AK+VMKTD D F+    ++  L  +N       G    E+  +R    K +IS +E+P + +PP+  G GY++S D+   +Y+  G
Sbjct:   80 LVILVTSRPSDVKARQAIRVTWGEKKTWWGHEVLTFFLLGQEAEREDKVLALSLEDEHALYGDIIRQDFLDTYNNLTLKTIMAFRWVIEFCPNAKYVMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIENYSYRGFFHKNHISYQEYPFKVFPPYCSGLGYIMSGDLVPKIYEMMG 258          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GT2_MOUSE (Beta-1,3-galactosyltransferase 2 OS=Mus musculus GN=B3galt2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 51/178 (28.65%), Postives = 86/178 (48.31%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFF---VGLHKNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            L + + +     + R A+R+TW   T +  G   +R F   + +  N  +   +  E+R Y DI    ++D YYNL     + +    T      +VMKTD D FV  + ++  L + ++     Y  G +     P+RN +SKWY+  + +P E YP +  G GYV S D+ + ++K
Sbjct:  153 LILLIAAEPGQIEARRAIRQTWGNET-LAPGIQIIRVFLLGISIKLNGYLQHAIQEESRQYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHTPYVMKTDSDMFVNTEYLIHKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFK 329          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: YI036_HUMAN (Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC402377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 46/177 (25.99%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  171 KPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY-GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVY 695
            K + L   +FS+  N  RR  +R+TW   T V+   +   F +G+  +     E+  E+    DI    F+D     T K +A+  +      +A F++K D++ FV +  ++  L  +  H   +Y G +  +  P+R+P+++ ++ L E+PE+ YP +  G  +++S D+ + +Y
Sbjct:   82 KNIFLLSLIFSSPGNGTRRDLIRKTWGNVTSVQGHPILTLFALGMPVSVTTQKEINKESCKNNDIIEGIFLDSSENQTLKIIAMIQWAVAFCPNALFILKVDEETFVNLPSLVDYLLNLKEHLEDIYVGRVLHQVTPNRDPQNRDFVPLSEYPEKYYPDYCSGEAFIMSQDVARMMY 258          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN3_MOUSE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 OS=Mus musculus GN=B3gnt3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 58/189 (30.69%), Postives = 90/189 (47.62%), Query Frame = 3
Query:  123 HTTDLEALRSYPLS-LHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKN----QIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVS 671
            H  D   LR   ++   +PV L + + S+  N+ RR  +R TW +   VR   +   F VG  ++    +  N  L  EA+ YGDI    F D ++NL   + L +    T   +A FV+  DDD F   D ++T L+  +    L  G +     P R P SK++I      E+ YPP+  G G+++S
Sbjct:   88 HCRDFPVLREPRVTKCAEPVFLLLAIKSSPANYGRRQMLRTTWARERRVRGAPLRRLFLVGSDRDPQQARKYNRLLELEAQKYGDILQWDFHDSFFNLTLKQVLFLEWQLTYCTNASFVLNGDDDVFAHTDNMVTYLQDHDPDQHLFVGHLIQNVGPIRVPWSKYFIPALVMAEDRYPPYCGGGGFLLS 276          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN3_HUMAN (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 OS=Homo sapiens GN=B3GNT3 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  156 PLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGL----HKNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVS 671
            P    +PV L + + S+ +N+ RR  +RRTW +  +VR   + + F VG     H+ + VN  L  EA+T+GDI    F D ++NL   + L +    T   +A FV+  DDD F   D ++  L+  +    L  G +     P R   SK+Y+       E YPP+  G G+++S
Sbjct:  100 PSKCAQPVFLLLVIKSSPSNYVRRELLRRTWGRERKVRGLQLRLLFLVGTASNPHEARKVNRLLELEAQTHGDILQWDFHDSFFNLTLKQVLFLQWQETRCANASFVLNGDDDVFAHTDNMVFYLQDHDPGRHLFVGQLIQNVGPIRAFWSKYYVPEVVTQNERYPPYCGGGGFLLS 276          
The following BLAST results are available for this feature:
BLAST of FC875602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
B3GL1_PONAB1.525e-1529.69UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GL1_HUMAN1.525e-1529.69UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GN5_XENTR9.883e-1530.32UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GL1_PIG9.883e-1528.57UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GN5_HUMAN2.875e-1431.69UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GL1_RAT2.875e-1430.17UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GT2_MOUSE3.755e-1428.65Beta-1,3-galactosyltransferase 2 OS=Mus musculus G... [more]
YI036_HUMAN4.905e-1425.99Putative UDP-GlcNAc:betaGal beta-1,3-N-acetylgluco... [more]
B3GN3_MOUSE4.905e-1430.69UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GN3_HUMAN4.905e-1431.64UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]

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Properties
Property NameValue
Genbank descriptionC31405G04EF CTVClemen1 Citrus clementina cDNA clone C31405G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875602 ID=FC875602; Name=FC875602; organism=Citrus clementina; type=EST; length=711bp
ATACATCCTTCGCTTATCGCGAAACTTTGGAGCCATGGCTGGTTAATGAA
GTTAGGATTTCTGGAGACCTGAAATTAATTTCCGTCTTGGCCAGTGGTTT
ACCCACGTCCGAGGATTCAGAGCATACAACTGATTTAGAAGCACTAAGAT
CTTATCCTCTATCTCTTCATAAACCAGTGGATTTGTTCATTGGTGTTTTC
TCAACAGCAAATAATTTTAAGCGAAGAATGGCAGTTAGAAGGACATGGAT
GCAGTACACTGAAGTGCGGTCAGGAACAGTTGCAGTTCGCTTTTTTGTTG
GTTTGCATAAAAACCAGATAGTCAATGGGGAACTCTGGAATGAGGCACGA
ACGTATGGAGACATACAGCTGATGCCTTTTGTTGACTACTACAATCTCAT
CACCTGGAAAACTTTAGCGATCTGCATCTTTGGGACGGATGTTGTTTCAG
CAAAATTTGTCATGAAGACAGATGACGATGCATTTGTTCGTGTGGATGAA
GTGCTGACTTCTTTAAAGAGGATTAATGTGCATTCTGGGTTGCTTTATGG
ACTCATTAACTCTGAGTCTCGACCACATCGGAATCCTGAAAGCAAGTGGT
ACATTAGCCTTGAGGAATGGCCTGAAGAAACTTACCCCCCTTGGGCGCAT
GGTCCTGGTTATGTTGTGTCCCATGACATAGGAAAGGCAGTGTACAAAGA
TACAGGAAGGG
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