FC875602

Overview
NameFC875602
Unique NameFC875602
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10220 contig Ccv1_Contig10220:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3G5A_DANRE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5A OS=Danio rerio GN=b3gnt5a PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 60/190 (31.58%), Postives = 94/190 (49.47%), Query Frame = 3
Query:  168 HKPVDLFIGVFSTANNFKRRMAVRRTW--MQYTEVRSGTVA-VRFFVGLHKNQ----IVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTD-VVSAKFVMKTDDDAFVRVDEV---LTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYKDT 704
            +K V L + V S+  NFKRR A+R TW    Y     G V  V F +G+  ++     +  EL  E   + D+    F+D ++ +T K L    +  +    A F+M  DDD F+ V  +   L  LK  NV + L  G ++  + P R  +SK+Y+  + +   +YP +  G GYVVS D+   +Y+ T
Sbjct:   85 NKDVLLLLFVKSSPGNFKRRQAIRSTWGNESYISQELGVVVKVVFAMGVRPDRSGHKTMQRELRKEHMAHHDLIQQDFLDTFHNLTVKLLLQFRWTHENCAHAHFLMSADDDVFIHVPNLVHYLQELKSQNVRN-LWVGHVHRGAPPVRKRDSKYYMPFDMYQWSSYPDYTAGAGYVVSGDVAAKIYQAT 273          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GT4_MOUSE (Beta-1,3-galactosyltransferase 4 OS=Mus musculus GN=B3galt4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 63/212 (29.72%), Postives = 99/212 (46.70%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVS-----AKFVMKTDDDAFVRVDEVLTSL------------------KRINVHS-------GLLY-GLINSESRPHRNPESKWYISLEEWPEE--TYPPWAHGPGYVVSHDIGKAVYKDTGR 710
            P  L I V +   +  +R A+R +W    E R   V   F +G  + Q +  +L +E+  + DI    F D Y  +T KTL+    G + V+     A++++KTDDD +V V E+++ L                  +   +H         LLY G ++   RP R PES+ ++S E WPE    +PP+A G GYV+S    + + K   R
Sbjct:   70 PPFLLILVCTAPEHLNQRNAIRASWGAIREARGFRVQTLFLLGKPRRQQL-ADLSSESAAHRDILQASFQDSYRNLTLKTLS----GLNWVNKYCPMARYILKTDDDVYVNVPELVSELIQRGGPSEQWQKGKEAQEETTAIHEEHRGQAVPLLYLGRVHWRVRPTRTPESRHHVSEELWPENWGPFPPYASGTGYVLSISAVQLILKVASR 276          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN9_BOVIN (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 OS=Bos taurus GN=B3GNT9 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 64/201 (31.84%), Postives = 93/201 (46.27%), Query Frame = 3
Query:  147 RSYPLSLHKP------------VDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQ-IVNGEL-------WN-----EARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVS 671
            R +PL +++P             DL I V S A +F+RR AVR+TW     V+   V   F +G+ +    V GE        W+     E+R Y DI L  F D +  +T K +    + +D     +FV K D D FV V  +L  L   +    LL G +  ++RP R   SK+YI    +    YP +A G G+V+S
Sbjct:   94 RRFPLLINQPHKCQGNGAFPRGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRGTGTVAGEAEAGTQTHWSALLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASDYCPDVRFVFKGDADVFVHVGNLLEFLAPRDPAQDLLAGDVIVQARPIRVRASKYYIPEAVYGLPAYPAYAGGGGFVLS 294          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GL1_MUSSI (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Mus spicilegus GN=B3galnt1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 55/189 (29.10%), Postives = 92/189 (48.68%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            LR +    H+   L I V S  ++ K R A+R TW +        V   F +G     +++ +   L +E   YGDI    F+D YN +T KT+    +  +   +AK++MKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++S D+   VY+
Sbjct:   67 LREHSNCSHQNPFLVILVTSRPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQQAEREDKTLALSLEDEHVLYGDIIRQDFLDTYNNLTLKTIMAFRWVMEFCPNAKYIMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFFHKNHISYQEYPFKVFPPYCSGLGYIMSGDLVPRVYE 255          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GL1_MOUSE (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 OS=Mus musculus GN=B3galnt1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 55/189 (29.10%), Postives = 92/189 (48.68%), Query Frame = 3
Query:  144 LRSYPLSLHKPVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVV-SAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            LR +    H+   L I V S  ++ K R A+R TW +        V   F +G     +++ +   L +E   YGDI    F+D YN +T KT+    +  +   +AK++MKTD D F+    ++  L  +N       G    ++  +R    K +IS +E+P + +PP+  G GY++S D+   VY+
Sbjct:   67 LREHSNCSHQNPFLVILVTSRPSDVKARQAIRVTWGEKKSWWGYEVLTFFLLGQQAEREDKTLALSLEDEHVLYGDIIRQDFLDTYNNLTLKTIMAFRWVMEFCPNAKYIMKTDTDVFINTGNLVKYLLNLNHSEKFFTGYPLIDNYSYRGFFHKNHISYQEYPFKVFPPYCSGLGYIMSGDLVPRVYE 255          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GT2_PONAB (Beta-1,3-galactosyltransferase 2 OS=Pongo abelii GN=B3GALT2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH--KNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            L + + +     + R A+R+TW   +      +   F +GL    N  +   +  E+R Y DI    ++D YYNL     + +    T      +VMKTD D FV  + ++  L + ++     Y  G +     P+RN +SKWY+  + +P E YP +  G GYV S D+ + ++K
Sbjct:  153 LILLIAAEPGQIEARRAIRQTWGNESLAPGIQITRIFLLGLSIKLNGYLQRAILEESRQYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLINKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFK 329          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GT2_HUMAN (Beta-1,3-galactosyltransferase 2 OS=Homo sapiens GN=B3GALT2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLH--KNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLY--GLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            L + + +     + R A+R+TW   +      +   F +GL    N  +   +  E+R Y DI    ++D YYNL     + +    T      +VMKTD D FV  + ++  L + ++     Y  G +     P+RN +SKWY+  + +P E YP +  G GYV S D+ + ++K
Sbjct:  153 LILLIAAEPGQIEARRAIRQTWGNESLAPGIQITRIFLLGLSIKLNGYLQRAILEESRQYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLINKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFK 329          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GT4_RAT (Beta-1,3-galactosyltransferase 4 OS=Rattus norvegicus GN=B3galt4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 64/212 (30.19%), Postives = 96/212 (45.28%), Query Frame = 3
Query:  174 PVDLFIGVFSTANNFKRRMAVRRTWMQYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVS-----AKFVMKTDDDAFVRVDEVLTSL------------------KRINVHS-------GLLY-GLINSESRPHRNPESKWYISLEEWPEE--TYPPWAHGPGYVVSHDIGKAVYKDTGR 710
            P  L I V +   +  +R A+R +W    E R   V   F +G    Q    +L +E+   GD+    F D Y  +T KTL     G + V+     A++++KTDDD +V V E+++ L                  +   VH         LLY G ++   RP R PES+ ++S E WPE    +PP+A G GYV+S    + + K   R
Sbjct:   70 PPFLLILVCTAPEHLNQRNAIRGSWGAIREARGFRVQTLFLLGEPMGQQF-ADLASESAAQGDVLQASFQDSYRNLTLKTLT----GLNWVNKYCPMARYILKTDDDVYVNVPELVSELIQRGGPSEQWQKGKEPQEETTAVHKEHKGQAVPLLYLGRVHWRVRPTRTPESRHHVSEELWPENWGPFPPYASGTGYVLSISAVQLILKVASR 276          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GN5_MOUSE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 OS=Mus musculus GN=B3gnt5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 53/182 (29.12%), Postives = 86/182 (47.25%), Query Frame = 3
Query:  183 LFIGVFSTANNFKRRMAVRRTWMQYTEVRS---GTVAVRFFVGLH---KNQIVNGELWNEARTYGDIQLMPFVD-YYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVD---EVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDIGKAVYK 698
            L + + +   N+ RR A+R+TW     V+S     + + F +G     K + +   L  E + Y DI    F+D ++NL +   L      T    AKF+M  DDD F+ +    E L  L++I V    + G ++    P R+  SK+Y+  E +    YP +  G  YVVS D+   +Y+
Sbjct:   88 LLLFIKTAPENYGRRSAIRKTWGNENYVQSQLNANIKILFALGTPGPLKGKELQKRLIGEDQVYKDIIQQDFIDSFHNLTSKFLLQFSWANTFCPHAKFLMTADDDIFIHMPNLIEYLQGLEQIGVRDFWI-GHVHRGGPPVRDKSSKYYVPYEMYKWPAYPDYTAGAAYVVSRDVAAKIYE 268          
BLAST of FC875602 vs. ExPASy Swiss-Prot
Match: B3GTD_ARATH (Probable beta-1,3-galactosyltransferase 13 OS=Arabidopsis thaliana GN=B3GALT13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 50/172 (29.07%), Postives = 85/172 (49.42%), Query Frame = 3
Query:  186 FIGVFSTANNFKRRMAVRRTWM-------QYTEVRSGTVAVRFFVGLHKNQIVNGELWNEARTYGDIQLMPFVDYYNLITWKTLAICIFGTDVVSAKFVMKTDDDAFVRVDEVLTSLKRINVHSGLLYGLINSESRPHRNPESKWYISLEEWPEETYPPWAHGPGYVVSHDI 680
            F+G+ +   +  RR A+R TWM       +  E  +G +A+RF +G  K++    EL +E   Y D  L+   + Y+ + +KTLA       +  ++F +K DDD ++R D +   L +   HS    G +  +     +P+ KWY  L +   + Y   A+GP Y +S D+
Sbjct:   87 FVGIQTGFRSAGRRRALRNTWMPSDPEGLRRLEESTG-LAIRFIIGKTKDEAKMVELRSEVAMYDDFILLDIEEEYSKLPYKTLAFFKAAYALYDSEFYVKADDDIYLRPDRLSLLLAKERGHSQTYLGCM-KKGPVFTDPKLKWYEPLADLLGKEYFLHAYGPIYALSADV 256          
The following BLAST results are available for this feature:
BLAST of FC875602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
B3G5A_DANRE6.406e-1431.58UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GT4_MOUSE8.366e-1429.72Beta-1,3-galactosyltransferase 4 OS=Mus musculus G... [more]
B3GN9_BOVIN1.093e-1331.84UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GL1_MUSSI1.093e-1329.10UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GL1_MOUSE1.093e-1329.10UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GT2_PONAB1.427e-1328.25Beta-1,3-galactosyltransferase 2 OS=Pongo abelii G... [more]
B3GT2_HUMAN1.427e-1328.25Beta-1,3-galactosyltransferase 2 OS=Homo sapiens G... [more]
B3GT4_RAT1.864e-1330.19Beta-1,3-galactosyltransferase 4 OS=Rattus norvegi... [more]
B3GN5_MOUSE1.208e-1229.12UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]
B3GTD_ARATH1.578e-1229.07Probable beta-1,3-galactosyltransferase 13 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC31405G04EF CTVClemen1 Citrus clementina cDNA clone C31405G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875602 ID=FC875602; Name=FC875602; organism=Citrus clementina; type=EST; length=711bp
ATACATCCTTCGCTTATCGCGAAACTTTGGAGCCATGGCTGGTTAATGAA
GTTAGGATTTCTGGAGACCTGAAATTAATTTCCGTCTTGGCCAGTGGTTT
ACCCACGTCCGAGGATTCAGAGCATACAACTGATTTAGAAGCACTAAGAT
CTTATCCTCTATCTCTTCATAAACCAGTGGATTTGTTCATTGGTGTTTTC
TCAACAGCAAATAATTTTAAGCGAAGAATGGCAGTTAGAAGGACATGGAT
GCAGTACACTGAAGTGCGGTCAGGAACAGTTGCAGTTCGCTTTTTTGTTG
GTTTGCATAAAAACCAGATAGTCAATGGGGAACTCTGGAATGAGGCACGA
ACGTATGGAGACATACAGCTGATGCCTTTTGTTGACTACTACAATCTCAT
CACCTGGAAAACTTTAGCGATCTGCATCTTTGGGACGGATGTTGTTTCAG
CAAAATTTGTCATGAAGACAGATGACGATGCATTTGTTCGTGTGGATGAA
GTGCTGACTTCTTTAAAGAGGATTAATGTGCATTCTGGGTTGCTTTATGG
ACTCATTAACTCTGAGTCTCGACCACATCGGAATCCTGAAAGCAAGTGGT
ACATTAGCCTTGAGGAATGGCCTGAAGAAACTTACCCCCCTTGGGCGCAT
GGTCCTGGTTATGTTGTGTCCCATGACATAGGAAAGGCAGTGTACAAAGA
TACAGGAAGGG
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