FC875604 | Citrus Genome Database

Overview


Name	FC875604
Unique Name	FC875604
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	696

Libraries


Library Name	Type
CTVClemen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC875604_ssr58	microsatellite	FC875604_ssr58:58..69.	BLAST: Citrus ESTs to Prunus persica proteins V1
FC875604_ssr17	microsatellite	FC875604_ssr17:17..28.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4556	contig	Ccv1_Contig4556:29..724.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 68/175 (38.86%), Postives = 107/175 (61.14%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGE 680
            A+ YVG+L P VTE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AIE MNG  L  R++ V  +  +K+ + E
Sbjct:   11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 61/194 (31.44%), Postives = 99/194 (51.03%), Query Frame = 3

Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A   +    Y+ N    + +E L +LF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374

HSP 3 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 57/172 (33.14%), Postives = 100/172 (58.14%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +  + L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 68/175 (38.86%), Postives = 107/175 (61.14%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGE 680
            A+ YVG+L P VTE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AIE MNG  L  R++ V  +  +K+ + E
Sbjct:   11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 61/194 (31.44%), Postives = 99/194 (51.03%), Query Frame = 3

Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A   +    Y+ N    + +E L +LF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374

HSP 3 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 57/172 (33.14%), Postives = 100/172 (58.14%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +  + L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 68/175 (38.86%), Postives = 107/175 (61.14%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGE 680
            A+ YVG+L P VTE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AIE MNG  L  R++ V  +  +K+ + E
Sbjct:   11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAE 182

HSP 2 Score: 95.1301 bits (235), Expect = 3.720e-19
Identity = 62/194 (31.96%), Postives = 99/194 (51.03%), Query Frame = 3

Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A   +    Y+ N    + +E L ELF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374

HSP 3 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 57/172 (33.14%), Postives = 100/172 (58.14%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +  + L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI+ +N + L  + + V +  SQ ++  ++GA      N++I N   D+D++ L + F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 69/169 (40.83%), Postives = 106/169 (62.72%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            A+ YVG LDP VTE +L+ELF   G V ++ V +D VT    GY +V + S ED + A++ LN   + GKP R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG  L  +++ V +   K
Sbjct:   48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNIL-SCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPK 214

HSP 2 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 56/177 (31.64%), Postives = 94/177 (53.11%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D + N  +GYGFV + + E A+ AIK +N + L  K + V     K  +  K  ++ AN   +++ N+D DV ++   + F   G I T+  I RD D G SRGFGF++Y   EA+  A++ +N      +++ V  A KK  + E
Sbjct:  139 FIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDI-TSASIARD-DQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREE 312

HSP 3 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 58/236 (24.58%), Postives = 98/236 (41.53%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD---------------------------------------------------TGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            YV N+D  VT+E   ELF + G + +  + +D      +G+GFV +   E A  A+  LN I+  G+ + V +A +                 +K+S   G NL+I NL+ DVD++ L D F+ FG I +   I+RD +                                                    G S+GFGF+ + + + +  A+  MN + +  + + V+ A +KD +
Sbjct:  232 YVKNIDLDVTDEDFRELFEKHGDITSASIARDD-QGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVR 466

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 75/198 (37.88%), Postives = 113/198 (57.07%), Query Frame = 3

Query:   93 TTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITV-SYAYKKDTKGE 680
            T+   P   A   G+ S      A+ YVG L+P V E  L+E+F   G V ++ V +D V+    GY +V +   ED + AI+ LN   + G+P R+  + +D  +   G  N+FI NL P +D K L+DTFSAFG I+ + K+  D D G S+ FGF+ Y++ EA+ AAIE++NG  L  R++ V  +  KKD + +
Sbjct:   44 TSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKIL-SVKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESK 239

HSP 2 Score: 96.6709 bits (239), Expect = 1.278e-19
Identity = 64/209 (30.62%), Postives = 107/209 (51.20%), Query Frame = 3

Query:  129 LGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            +G+H +++++++            YV N+D   TE+   ELF   G + ++Y+ KD      +G+GFV F   E A  A++ LN  ++ G+ I V +A +                 +K S   G NLF+ NLD  +D + L + F  FG I T+ K+M D D G S+GFGF+ + + E +  AI  MN + +  + + V+ A +KD +
Sbjct:  227 VGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTI-TSSKVMVD-DAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVR 432

HSP 3 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 55/187 (29.41%), Postives = 102/187 (54.55%), Query Frame = 3

Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            SA R+ D   ++ NL P +  + L + F   G +++V V  D +    + +GFV + +EE A  AI+ +N + L  + +     V+K  ++ K  ++ AN   +++ N+D    EK   + F+ FG I T+  + +D + G S+GFGF++++  EA+  A+E +N + +  ++I V  A KK  + E
Sbjct:  148 SARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQ-SKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKI-TSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTE 331

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 67/175 (38.29%), Postives = 107/175 (61.14%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGE 680
            A+ YVG+L P VTE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AI+ MNG  L  R++ V  +  +K+ + E
Sbjct:   11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 56/172 (32.56%), Postives = 97/172 (56.40%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +  + L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI  +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L + F  +G  ++  K+M D D G SRGFGF+S++  E +  A++ MNG+ L  + I V  A KK
Sbjct:  102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALS-VKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269

HSP 3 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 60/194 (30.93%), Postives = 95/194 (48.97%), Query Frame = 3

Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A   +    Y+ N    + +E L E F Q G  ++V V  D      +G+GFV F   EDA  A+  +N   L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   F+ FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: HSH49_YEAST (Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 65/183 (35.52%), Postives = 110/183 (60.11%), Query Frame = 3

Query:  165 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKG 677
            T YVGN+DP++T+E L+ELF+Q  PV+ +  PKD+V   +QGY F+EF ++ DA YAIK++ N ++LY + I+V + +    + ++ +N           LFI NL   +D   L   F+ FG ++  P+I     +       ++ ++ FE +D AI+++N Q + + +ITV YA+K++ KG
Sbjct:   10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKIMNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFNKFGKLIREPEIFY--LSNGKLKCAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKENGKG 190

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.833e-29
Identity = 78/211 (36.97%), Postives = 122/211 (57.82%), Query Frame = 3

Query:   87 GMTTRIAPGVGANLLGQH---------SAERNQDATA--YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAY-KKDTKGE 680
            G  T +   VGA+  G+          SA  +  A+A  YVG LDP VTE +L+ELF Q G V ++ V +D VT    GY +V + +  D + A++ LN   + G+P R+  + +D      G  N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +NG  L  +++ V +   KKD + +
Sbjct:   25 GEKTTVNTNVGASFTGEEIDTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL-SCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK 233

HSP 2 Score: 88.9669 bits (219), Expect = 2.666e-17
Identity = 64/231 (27.71%), Postives = 105/231 (45.45%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT----------------------------------------------GNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            YV N++P+VT++    LF + G V +  + +D+ T   +G+GFV F S EDA  A++ LN  + +G+ + V +A                  Q+K S   G NL+I NLD +VD++ L   FS FG I T+ K+MRD  T                                              G S+GFGF+ + + + +  A+  MN + + ++ + V+ A +KD +
Sbjct:  245 YVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPI-TSAKVMRDSITEPGEEGESKEGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVR 474

HSP 3 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 53/177 (29.94%), Postives = 94/177 (53.11%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + ++E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N++P+V +      F  +G  VT+  + RD +TG SRGFGF+++ S E +  A++ +N +    + + V  A KK  + E
Sbjct:  152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGD-VTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREE 326

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.833e-29
Identity = 67/175 (38.29%), Postives = 106/175 (60.57%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVS-YAYKKDTKGE 680
            A+ YVG+L P  TE +L+E F  AGP++++ V +D +T    GY +V F+   DA+ A+  +N   + GKP+R+  + +D      G  N+FI NLD  +D K LYDTFSAFG I++   +    D   S+G+GF+ +++ EA++ AIE MNG  L  R++ V  +  +K+ + E
Sbjct:   11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182

HSP 2 Score: 93.9745 bits (232), Expect = 8.286e-19
Identity = 61/194 (31.44%), Postives = 99/194 (51.03%), Query Frame = 3

Query:  144 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            A   +    Y+ N    + +E L +LF + GP ++V V  D  +   +G+GFV F   EDA  A+  +N  +L GK I V +A                  QD+ +   G NL++ NLD  +D++ L   FS FG I T+ K+M +   G S+GFGF+ + S E +  A+  MNG+ +  + + V+ A +K+ +
Sbjct:  185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 374

HSP 3 Score: 92.4337 bits (228), Expect = 2.411e-18
Identity = 57/172 (33.14%), Postives = 100/172 (58.14%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            ++ NLD  +  + L++ F   G +++  V  D   N  +GYGFV F ++E A+ AI+ +N + L  + + V +  S+ ++  ++GA      N++I N   D+D++ L D F  FG  ++  K+M D ++G S+GFGF+S++  E +  A++ MNG+ L  +QI V  A KK
Sbjct:  102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

[Close]

BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 70/175 (40.00%), Postives = 110/175 (62.86%), Query Frame = 3

Query:  162 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAY-KKDTKGE 680
            A+ YVG LDP VTE +L+ELF Q G V ++ V +D VT    GY +V + +  D + A++ LN   + G+P R+  + +D      GA N+FI NLD  +D K L+DTF+AFG I+ + K+ +D + GNS+G+GF+ Y++ EA+  AI+ +NG  L  +++ V +   KKD + +
Sbjct:   60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNIL-SCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK 232

HSP 2 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 53/177 (29.94%), Postives = 97/177 (54.80%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGE 680
            ++ NLD  +  + L + F   G +++  V +D   N  +GYGFV + ++E A  AIK +N + L  K + V     K  +  K  ++ AN   +++ N++ +V ++   + F+ FG  VT+  + RD + G SRGFGF+++ + EA+  A++ +NG+    + + V  A KK  + E
Sbjct:  151 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGE-VTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREE 324

HSP 3 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 59/225 (26.22%), Postives = 97/225 (43.11%), Query Frame = 3

Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP----------------------------------------DTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTK 674
            YV N++ +VT+E   ELF + G V +  + +D+     +G+GFV F + E A  A+  LN     G+ + V +A +        +KS +           G NL+I NL  DVD+  L   FS +G I T+ K+MRD                                           G S+GFGF+ + + + +  A+  MN + +  + + V+ A +KD +
Sbjct:  244 YVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPI-TSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVR 466

The following BLAST results are available for this feature:

BLAST of FC875604 vs. ExPASy Swiss-Prot

BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191


Match Name	E-value	Identity	Description
PABP1_HUMAN	3.036e-29	38.86	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	3.036e-29	38.86	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]
PABP1_MOUSE	3.965e-29	38.86	Polyadenylate-binding protein 1 OS=Mus musculus GN...	[more]
PABP_PHANO	6.763e-29	40.83	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_LODEL	6.763e-29	37.88	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABPB_XENLA	6.763e-29	38.29	Polyadenylate-binding protein 1-B OS=Xenopus laevi...	[more]
HSH49_YEAST	6.763e-29	35.52	Protein HSH49 OS=Saccharomyces cerevisiae GN=HSH49...	[more]
PABP_MAGGR	8.833e-29	36.97	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP1_PONAB	8.833e-29	38.29	Polyadenylate-binding protein 1 OS=Pongo abelii GN...	[more]
PABP_NEUCR	1.507e-28	40.00	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG