FC875604

Overview
NameFC875604
Unique NameFC875604
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 52/159 (32.70%), Postives = 81/159 (50.94%), Query Frame = 3
Query:  174 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-----------GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 617
            V  L   +T++ L  LF   G V +  + +D+V                GYGFV + + +DA+ AI  LN ++L  K I+V+ A    +S+   ANL+I  L   + +K + D F  FG I+ N +++ D  TG SRG  FI +D    ++ AI + NG
Sbjct:   24 VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RB87F_DROME (Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila melanogaster GN=Hrb87F PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            G+   E  Q    ++G LD + T++ L   F + G +V+V V KD  T   +G+GF+ +      D A +     K+ G+ +   +A   Q+  S + GA    LF+G L  D DE+ L + F  FG IV +  I+ D DTG  RGF FI +D ++  D  I
Sbjct:   14 GEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNA-QNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIV-SVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PABP_ENCCU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Encephalitozoon cuniculi GN=PAB1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 57/179 (31.84%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  165 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE---AMNGQYLXHRQITVSYAYKKDTKGERHGT 692
            T YVG L P+  +  L+ +F   G V++V + K         + FV F +EEDA+ AI+     +L+ + IRV K  +D++  + G N+F+ NL  D   K L D FS FG IV+    +     G S+G+GF+ +   +A+   I+   +++G  L   +I V     +  KGE   T
Sbjct:   15 TIYVGELSPKTLDSDLFRVFSNVGKVLSVKLIKR--AEPVSSFAFVTFENEEDAERAIREYKHYELHNRQIRVMK--KDERPPETG-NIFVKNLPEDFTGKDLDDAFSMFGEIVSCK--VATTSHGKSKGYGFVQFKEKKAAKKVIKNFSSLDGLLLGGNRIVVELYNPEIKKGESKKT 186          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 60/192 (31.25%), Postives = 86/192 (44.79%), Query Frame = 3
Query:  165 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL------------------NMIKLYGK------PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKD 668
            T +VG L P    E L ELF Q GPV   +V  ++ +   +G+G+V F   ED   A+K +                  N  K  GK      P +  KA + K + D  A L I NL     E  L   F+ FG ++    I R PD G  RGFGF+ + +   +  A++ MN + +  R + V +A  KD
Sbjct:    5 TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVA-DKKARLIIRNLSFKCSEDDLKTVFAQFGAVL-EVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKD 193          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = 3
Query:  141 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKK 665
            S E     T +   L  ++    L + F   G V +V +  DR +   +G  +VEF   +    AI +    +L G PI V  +  +K  L   AN           L++G+L  ++ E +L   F  FG I  N  +M+D DTG S+G+GFI++   E +  A+E +NG  L  R + V +  ++
Sbjct:  159 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQ-RLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKI-DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 342          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 48/149 (32.21%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA----SQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 602
            ++G L P  TEE L   + Q G VV+V V +D  T   +G+GF+ +      D A +    I + GK +   +A     ++ +  ++    LF+G L  + DE+ L + F  FG +V + K++ D  TG  RGF F+ +D ++A D AI
Sbjct:   35 FIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHI-IDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVV-SVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: PUF68_DROME (Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 49/181 (27.07%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  126 LLGQHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-------------QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 614
            L  Q +  + Q A A     YVG++  ++ E+ +   F   GP+ ++ +  D +T  H+G+ FVE+   E A  A++ +N   + G+ I+V + S             ++ KS +    +++ ++ PD+ E+ +   F AFG I+   K+ +       +G+GFI Y + +A D AI +MN
Sbjct:  113 LATQRTQVQRQQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFN---RIYVASIHPDLSEEDIKSVFEAFGPIL-YCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMN 289          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 3
Query:  171 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLXHRQITVSYAYKKDTKGERHG 689
            ++G LD + T+E L   F + G +V+V V KD  T   +G+GF+ +      D A K     K+ G+ +   +A   QD  S + GA    LF+G L  D DE+ + D F  FG IV +  I+ D +TG  RGF F+ +D ++  D  +     Q L  + + V  A  K    +  G
Sbjct:   34 FIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQK-SRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIV-DINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQ-LNGKMVDVKKALPKQNDQQGGG 208          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 53/173 (30.64%), Postives = 82/173 (47.40%), Query Frame = 3
Query:  108 PGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            P    N     S E+      Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+       L    ++   A Q ++      NL+I NL   +DE+ L +    FG +++  +I+RD + G SRG GF   +S E  +  I+  NG+YL
Sbjct:   38 PSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAV-----ASLKANGVQAQMAKQQEQD---PTNLYISNLPISMDEQELENMLKPFGHVIST-RILRDAN-GVSRGVGFARMESTEKCEVVIQHFNGKYL 200          
BLAST of FC875604 vs. ExPASy Swiss-Prot
Match: RBMS2_BOVIN (RNA-binding motif, single-stranded-interacting protein 2 OS=Bos taurus GN=RBMS2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 3
Query:  132 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 626
            G  + ++      Y+  L P  T++ L +L    G +V+     D+ TN  +GYGFV+F S   A  A+  L         ++   A Q ++      NL+I NL   +DE+ L      FG +++  +I+RD  +G SRG GF   +S E  +A I   NG+Y+
Sbjct:   46 GSTAHDQLSKTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK-----ASGVQAQMAKQQEQD---PTNLYISNLPLSMDEQELEGMLKPFGQVIST-RILRD-TSGTSRGVGFARMESTEKCEAIITHFNGKYI 200          
The following BLAST results are available for this feature:
BLAST of FC875604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
ELV1A_XENLA6.145e-1432.70ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
RB87F_DROME1.369e-1333.33Heterogeneous nuclear ribonucleoprotein 87F OS=Dro... [more]
PABP_ENCCU1.788e-1331.84Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RBM28_HUMAN3.050e-1331.25RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE... [more]
RBM23_HUMAN3.050e-1329.03Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]
RB97D_DROME3.983e-1332.21Ribonucleoprotein RB97D OS=Drosophila melanogaster... [more]
PUF68_DROME3.983e-1327.07Poly(U)-binding-splicing factor half pint OS=Droso... [more]
ROA1_DROME5.202e-1332.02Heterogeneous nuclear ribonucleoprotein A1 OS=Dros... [more]
RBMS3_MOUSE5.202e-1330.64RNA-binding motif, single-stranded-interacting pro... [more]
RBMS2_BOVIN5.202e-1330.30RNA-binding motif, single-stranded-interacting pro... [more]

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Properties
Property NameValue
Genbank descriptionC31405G06EF CTVClemen1 Citrus clementina cDNA clone C31405G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875604 ID=FC875604; Name=FC875604; organism=Citrus clementina; type=EST; length=696bp
GGGTAATTGGTAAATGAATAAATAAATACAAGGAACCACAGAGAGAGCGC
GGCAAGTAGAAGAAGAAGAAGTAATAACGAGTAAAAGGCATGACCACTCG
AATCGCTCCTGGAGTTGGGGCCAATTTGCTGGGCCAACACTCCGCCGAGA
GAAATCAAGATGCCACAGCTTATGTCGGCAATCTCGATCCCCAGGTTACT
GAGGAGCTACTTTGGGAGTTGTTTGTTCAAGCAGGTCCTGTTGTTAATGT
GTATGTTCCAAAAGATAGAGTGACAAACCTTCATCAAGGATACGGATTTG
TAGAGTTCCGAAGTGAGGAAGATGCTGATTATGCAATAAAGGTGCTGAAT
ATGATAAAGCTTTATGGGAAGCCGATACGTGTGAATAAGGCATCCCAAGA
CAAAAAGAGCTTAGATGTGGGGGCAAACCTTTTTATTGGAAACCTTGACC
CAGATGTGGATGAGAAACTACTATATGATACATTCAGTGCGTTTGGAGTC
ATTGTTACAAATCCCAAGATTATGCGAGATCCTGACACTGGAAATTCTCG
TGGTTTTGGTTTCATTAGCTATGATTCCTTTGAGGCATCCGATGCAGCTA
TTGAGGCAATGAATGGCCAATACCTTTGNCACCGTCAAATTACTGTCTCA
TATGCATATAAGAAAGACACTAAAGGAGAGCGCCATGGTACTCCGG
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